Mercurial > repos > iuc > circexplorer2

comparison macros.xml @ 0:581c89681b37 draft default tip

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/circexplorer2 commit fe03991cd7c43f5266314d1fb9e4108f1ab102e8
author iuc
date Fri, 26 Aug 2022 22:42:55 +0000
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-1:000000000000 0:581c89681b37
1 <macros>
2 <token name="@TOOL_VERSION@">2.3.8</token>
3 <token name="@VERSION_SUFFIX@">0</token>
4 <xml name="requirements">
5 <requirements>
6 <requirement type="package" version="@TOOL_VERSION@">circexplorer2</requirement>
7 </requirements>
8 </xml>
9 <xml name="xrefs">
10 <xrefs>
11 <xref type="bio.tools">circexplorer2</xref>
12 </xrefs>
13 </xml>
14 <xml name="parse_fusion" token_format="" token_label="" token_help="">
15 <param name="fusion_file" type="data" format="@FORMAT@" label="@LABEL@" help="@HELP@"/>
16 </xml>
17 <xml name="parse_statistics">
18 <param argument="-f" type="boolean" truevalue="-f" falsevalue="" checked="false"
19 label="Statistics fragment numbers rather than read numbers"/>
20 </xml>
21 <xml name="genome_file">
22 <param argument="--genome" type="data" format="fasta" label="Reference genome" help="In FASTA format"/>
23 </xml>
24 <xml name="annotation_file">
25 <param argument="--ref" type="data" format="txt" label="Gene annotation"
26 help="The file is in the format of Gene Predictions and RefSeq Genes with Gene Names" />
27 </xml>
28 <xml name="junction_file">
29 <param argument="--bed" type="data" format="bed" label="Back spliced junction file"
30 help="This file can be created by CIRCexplorer2 parse or CIRCexplorer2 align" />
31 </xml>
32 <xml name="tophat_file">
33 <param argument="--tophat" type="data" format="tgz" label="TopHat alignment file"
34 help="Generated by the align module" />
35 </xml>
36 <token name="@threads@"><![CDATA[--thread=\${GALAXY_SLOTS:-10}]]></token>
37 <xml name="citations">
38 <citations>
39 <citation type="doi">10.1101/gr.202895.115</citation>
40 </citations>
41 </xml>
42 </macros>