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comparison chromeister.xml @ 4:abd4855bb472 draft

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"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/chromeister commit bf4cb96e27bcbdac59321f00669f4efd6013ee44"
author iuc
date Wed, 14 Apr 2021 06:06:36 +0000
parents 4d428c882301
children 0d9201fcf2c9
comparison
equal deleted inserted replaced
3:4d428c882301 4:abd4855bb472
66 <data name="output_score" format="txt" label="${tool.name} on ${on_string}: Comparison score"/> 66 <data name="output_score" format="txt" label="${tool.name} on ${on_string}: Comparison score"/>
67 </outputs> 67 </outputs>
68 68
69 <tests> 69 <tests>
70 <!-- test run w defaults (and non default for dimension) --> 70 <!-- test run w defaults (and non default for dimension) -->
71 <test expect_num_outputs="5"> 71 <test expect_num_outputs="6">
72 <param name="query" value="mycoplasma-232.fasta"/> 72 <param name="query" value="mycoplasma-232.fasta"/>
73 <param name="db" value="mycoplasma-7422.fasta"/> 73 <param name="db" value="mycoplasma-7422.fasta"/>
74 <param name="dimension" value="500"/> 74 <param name="dimension" value="500"/>
75 <output name="output" file="mycoplasma-232.fasta-mycoplasma-7422.fasta.mat"/> 75 <output name="output" file="mycoplasma-232.fasta-mycoplasma-7422.fasta.mat"/>
76 <output name="output_imagen" file="mycoplasma-232.fasta-mycoplasma-7422.fasta.mat.filt.png" compare="sim_size"/> 76 <output name="output_imagen" file="mycoplasma-232.fasta-mycoplasma-7422.fasta.mat.filt.png" compare="sim_size"/>
83 <has_text text="-diffuse 4"/> 83 <has_text text="-diffuse 4"/>
84 <has_text text="compute_score.R"/> 84 <has_text text="compute_score.R"/>
85 </assert_command> 85 </assert_command>
86 </test> 86 </test>
87 <!-- test run w non defaults (and default for dimension) --> 87 <!-- test run w non defaults (and default for dimension) -->
88 <test expect_num_outputs="5"> 88 <test expect_num_outputs="6">
89 <param name="query" value="mycoplasma-232.fasta"/> 89 <param name="query" value="mycoplasma-232.fasta"/>
90 <param name="db" value="mycoplasma-7422.fasta"/> 90 <param name="db" value="mycoplasma-7422.fasta"/>
91 <param name="kmer" value="16"/> 91 <param name="kmer" value="16"/>
92 <param name="diffuse" value="3"/> 92 <param name="diffuse" value="3"/>
93 <param name="grid" value=""/> 93 <param name="grid" value=""/>
122 <has_text text="-diffuse 3"/> 122 <has_text text="-diffuse 3"/>
123 <has_text text="compute_score-nogrid.R"/> 123 <has_text text="compute_score-nogrid.R"/>
124 </assert_command> 124 </assert_command>
125 </test> 125 </test>
126 <!-- test to check grid --> 126 <!-- test to check grid -->
127 <test expect_num_outputs="5"> 127 <test expect_num_outputs="6">
128 <param name="query" value="mycoplasma-232.fasta"/> 128 <param name="query" value="mycoplasma-232.fasta"/>
129 <param name="db" value="mycoplasma-7422.fasta"/> 129 <param name="db" value="mycoplasma-7422.fasta"/>
130 <param name="dimension" value="500"/> 130 <param name="dimension" value="500"/>
131 <param name="grid" value="true"/> 131 <param name="grid" value="true"/>
132 <output name="output" file="mycoplasma-232.fasta-mycoplasma-7422.fasta.mat"/> 132 <output name="output" file="mycoplasma-232.fasta-mycoplasma-7422.fasta.mat"/>
147 <param name="kmer" value="32"/> 147 <param name="kmer" value="32"/>
148 <param name="diffuse" value="4"/> 148 <param name="diffuse" value="4"/>
149 <param name="dimension" value="1000"/> 149 <param name="dimension" value="1000"/>
150 <param name="grid" value=""/> 150 <param name="grid" value=""/>
151 <param name="pngevents" value="pngevents"/> 151 <param name="pngevents" value="pngevents"/>
152 <output name="output"/>
153 <output name="output_imagen"/>
154 <output name="output_csv"/>
155 <output name="output_events"/>
156 <output name="output_score"/>
157 <output name="output_events_png"> 152 <output name="output_events_png">
158 <assert_contents> 153 <assert_contents>
159 <has_text text="PNG"/> 154 <has_text text="PNG"/>
160 </assert_contents> 155 </assert_contents>
161 </output> 156 </output>