Mercurial > repos > iuc > chira_quantify
diff chira_quantify.xml @ 10:7d46a32774ae draft
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/chira commit 51f68a6d51d9e87f8e54021ce760b1506a3589b8"
| author | iuc |
|---|---|
| date | Sun, 14 Jun 2020 21:33:42 +0000 |
| parents | 5f9b51cc2b4f |
| children | ce47140889db |
line wrap: on
line diff
--- a/chira_quantify.xml Sat Jun 06 12:10:34 2020 +0000 +++ b/chira_quantify.xml Sun Jun 14 21:33:42 2020 +0000 @@ -25,7 +25,7 @@ Always set this value relative to your sequencing depth. Setting this to lower leads CRLs of random multimappings Also consider setting the --crl_share option along with this"/> - <param name="em_threshold" type="float" value="1" label="EM threshold" + <param name="em_threshold" type="float" value="0.1" label="EM threshold" help="The maximum difference of transcripts expression between two consecutive iterations of EM algorithm to converge."/> <param name="crl" type="boolean" truevalue="-crl" falsevalue="" checked="true" label="Create CRLs" help="Create CRLs and qunatify them or use the loci further without creating the CRLs" /> @@ -37,6 +37,7 @@ <tests> <test expect_num_outputs="1"> <param name="segments" value="segments.bed"/> + <param name="em_threshold" value="1"/> <param name="merged" value="merged.bed"/> <param name="min_locus_size" value="5"/> <output name="loci" file="loci.counts"/>