Mercurial > repos > iuc > chira_quantify

comparison chira_quantify.xml @ 13:ce47140889db draft

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"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/chira commit baafc05b1428cf0ec56a5171c41f2d429a0e0f96"
author iuc
date Thu, 13 Aug 2020 06:39:51 +0000
parents 7d46a32774ae
children b8eefae95bcb
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12:d5722c98969a 13:ce47140889db
23 <param name="min_locus_size" type="integer" value="10" label="Minimum locus size" min="1" 23 <param name="min_locus_size" type="integer" value="10" label="Minimum locus size" min="1"
24 help="Minimum number of reads a locus should have in order to participate in CRL creation. 24 help="Minimum number of reads a locus should have in order to participate in CRL creation.
25 Always set this value relative to your sequencing depth. Setting this to lower leads 25 Always set this value relative to your sequencing depth. Setting this to lower leads
26 CRLs of random multimappings Also consider setting the --crl_share option 26 CRLs of random multimappings Also consider setting the --crl_share option
27 along with this"/> 27 along with this"/>
28 <param name="em_threshold" type="float" value="0.1" label="EM threshold" 28 <param name="em_threshold" type="float" value="0.00001" label="EM threshold"
29 help="The maximum difference of transcripts expression between two consecutive iterations of EM algorithm to converge."/> 29 help="The maximum difference of transcripts expression between two consecutive iterations of EM algorithm to converge."/>
30 <param name="crl" type="boolean" truevalue="-crl" falsevalue="" checked="true" 30 <param name="crl" type="boolean" truevalue="-crl" falsevalue="" checked="true"
31 label="Create CRLs" help="Create CRLs and qunatify them or use the loci further without creating the CRLs" /> 31 label="Create CRLs" help="Create CRLs and qunatify them or use the loci further without creating the CRLs" />
32 </inputs> 32 </inputs>
33 <outputs> 33 <outputs>