Mercurial > repos > iuc > chira_map

comparison chira_map.xml @ 3:3ce9ccf8c994 draft

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"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/chira commit aafb8e5de9023eeddd7f4683909f418ef5aae086"
author iuc
date Fri, 20 Mar 2020 08:56:23 +0000
parents bbeefa1f6bd0
children 2032d4ab9cbd
comparison
equal deleted inserted replaced
2:f7483e0d49c9 3:3ce9ccf8c994
98 <param name="ref_fasta1" value="ref1.fasta"/> 98 <param name="ref_fasta1" value="ref1.fasta"/>
99 <param name="ref_fasta2" value="ref2.fasta"/> 99 <param name="ref_fasta2" value="ref2.fasta"/>
100 <param name="unmapped" value="True"/> 100 <param name="unmapped" value="True"/>
101 <output name="mapped_bed" > 101 <output name="mapped_bed" >
102 <assert_contents> 102 <assert_contents>
103 <has_text_matching expression="mmu-miR-6898-5p\t11\t21\t2|2,mmu-miR-6898-5p,11,21,+,10M39S\t0\t+" /> 103 <has_text_matching expression="mmu-miR-6898-5p\t11\t21\t2\|2,mmu-miR-6898-5p,11,21,\+,10M39S\t1\t\+" />
104 </assert_contents> 104 </assert_contents>
105 </output> 105 </output>
106 <output name="unmapped_fasta" > 106 <output name="unmapped_fasta" >
107 <assert_contents> 107 <assert_contents>
108 <has_text_matching expression="AAAAGACTCTGTAGACATGGCTGGTCTTGAACTCACAGAGATTTGTCTGCCTTTC" /> 108 <has_text_matching expression="AAAAGACTCTGTAGACATGGCTGGTCTTGAACTCACAGAGATTTGTCTGCCTTTC" />
113 <test expect_num_outputs="1"> 113 <test expect_num_outputs="1">
114 <param name="aligner" value="clan"/> 114 <param name="aligner" value="clan"/>
115 <param name="query" value="reads.fasta"/> 115 <param name="query" value="reads.fasta"/>
116 <param name="ref_type" value="split"/> 116 <param name="ref_type" value="split"/>
117 <param name="ref_fasta1" value="ref1.fasta"/> 117 <param name="ref_fasta1" value="ref1.fasta"/>
118 <param name="ref_fasta2" value="ref2.fasta"/> 118 <param name="ref_fasta2" value="ref2.fasta"/>
119 <param name="unmapped" value="True"/> 119 <param name="unmapped" value="True"/>
120 <output name="mapped_bed" > 120 <output name="mapped_bed" >
121 <assert_contents> 121 <assert_contents>
122 <has_text_matching expression="mmu-miR-20a-5p\t0\t23\t3|2,mmu-miR-20a-5p,0,23,+,5S23M27S\t0\t+" /> 122 <has_text_matching expression="mmu-miR-20a-5p\t0\t23\t3\|2,mmu-miR-20a-5p,0,23,\+,5S23M27S\t1\t\+" />
123 </assert_contents> 123 </assert_contents>
124 </output> 124 </output>
125 </test> 125 </test>
126 </tests> 126 </tests>
127 <help> 127 <help>