Mercurial > repos > iuc > checkm_qa

comparison qa.xml @ 4:cb4a5b624518 draft default tip

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/checkm commit 97fbd010c5406d4980d64b320f25f4716aea2fc9
author iuc
date Tue, 17 Jun 2025 12:54:02 +0000
parents 159422a38a42
children
comparison
equal deleted inserted replaced
3:2b4fb5791f1a 4:cb4a5b624518
182 <param name="skip_pseudogene_correction" value="false"/> 182 <param name="skip_pseudogene_correction" value="false"/>
183 <param name="aai_strain" value="0.9"/> 183 <param name="aai_strain" value="0.9"/>
184 <param name="ignore_thresholds" value="false"/> 184 <param name="ignore_thresholds" value="false"/>
185 <param name="e_value" value="1e-10"/> 185 <param name="e_value" value="1e-10"/>
186 <param name="length" value="0.7"/> 186 <param name="length" value="0.7"/>
187 <param name="extra_outputs" value=""/>
188 <output name="output_f2" ftype="tabular"> 187 <output name="output_f2" ftype="tabular">
189 <assert_contents> 188 <assert_contents>
190 <has_text text="Marker lineage"/> 189 <has_text text="Marker lineage"/>
191 <has_text text="Mean scaffold length"/> 190 <has_text text="Mean scaffold length"/>
192 <has_text text="f__Enterobacteriaceae"/> 191 <has_text text="f__Enterobacteriaceae"/>
218 <param name="skip_pseudogene_correction" value="false"/> 217 <param name="skip_pseudogene_correction" value="false"/>
219 <param name="aai_strain" value="0.9"/> 218 <param name="aai_strain" value="0.9"/>
220 <param name="ignore_thresholds" value="false"/> 219 <param name="ignore_thresholds" value="false"/>
221 <param name="e_value" value="1e-10"/> 220 <param name="e_value" value="1e-10"/>
222 <param name="length" value="0.7"/> 221 <param name="length" value="0.7"/>
223 <param name="extra_outputs" value=""/>
224 <output name="output_f3" ftype="tabular"> 222 <output name="output_f3" ftype="tabular">
225 <assert_contents> 223 <assert_contents>
226 <has_text text="637000110"/> 224 <has_text text="637000110"/>
227 <has_text text="Strain heterogeneity"/> 225 <has_text text="Strain heterogeneity"/>
228 <has_text text="UID5139"/> 226 <has_text text="UID5139"/>
255 <param name="skip_pseudogene_correction" value="false"/> 253 <param name="skip_pseudogene_correction" value="false"/>
256 <param name="aai_strain" value="0.9"/> 254 <param name="aai_strain" value="0.9"/>
257 <param name="ignore_thresholds" value="false"/> 255 <param name="ignore_thresholds" value="false"/>
258 <param name="e_value" value="1e-10"/> 256 <param name="e_value" value="1e-10"/>
259 <param name="length" value="0.7"/> 257 <param name="length" value="0.7"/>
260 <param name="extra_outputs" value=""/>
261 <output name="output_f4" ftype="tabular"> 258 <output name="output_f4" ftype="tabular">
262 <assert_contents> 259 <assert_contents>
263 <has_text text="637000110"/> 260 <has_text text="637000110"/>
264 <has_text text="Node Id: UID5103; Marker lineage: f__Enterobacteriaceae"/> 261 <has_text text="Node Id: UID5103; Marker lineage: f__Enterobacteriaceae"/>
265 <has_text text="PF02542.1"/> 262 <has_text text="PF02542.1"/>
291 <param name="skip_pseudogene_correction" value="false"/> 288 <param name="skip_pseudogene_correction" value="false"/>
292 <param name="aai_strain" value="0.9"/> 289 <param name="aai_strain" value="0.9"/>
293 <param name="ignore_thresholds" value="false"/> 290 <param name="ignore_thresholds" value="false"/>
294 <param name="e_value" value="1e-10"/> 291 <param name="e_value" value="1e-10"/>
295 <param name="length" value="0.7"/> 292 <param name="length" value="0.7"/>
296 <param name="extra_outputs" value=""/>
297 <output name="output_f5" ftype="tabular"> 293 <output name="output_f5" ftype="tabular">
298 <assert_contents> 294 <assert_contents>
299 <has_text text="637000110"/> 295 <has_text text="637000110"/>
300 <has_text text="TIGR02432"/> 296 <has_text text="TIGR02432"/>
301 <has_text text="AC_000091_165"/> 297 <has_text text="AC_000091_165"/>
327 <param name="skip_pseudogene_correction" value="false"/> 323 <param name="skip_pseudogene_correction" value="false"/>
328 <param name="aai_strain" value="0.9"/> 324 <param name="aai_strain" value="0.9"/>
329 <param name="ignore_thresholds" value="false"/> 325 <param name="ignore_thresholds" value="false"/>
330 <param name="e_value" value="1e-10"/> 326 <param name="e_value" value="1e-10"/>
331 <param name="length" value="0.7"/> 327 <param name="length" value="0.7"/>
332 <param name="extra_outputs" value=""/>
333 <output name="output_f6" ftype="tabular"> 328 <output name="output_f6" ftype="tabular">
334 <assert_contents> 329 <assert_contents>
335 <has_text text="Marker Id"/> 330 <has_text text="Marker Id"/>
336 <has_text text="No marker genes satisfied"/> 331 <has_text text="No marker genes satisfied"/>
337 </assert_contents> 332 </assert_contents>
362 <param name="skip_pseudogene_correction" value="false"/> 357 <param name="skip_pseudogene_correction" value="false"/>
363 <param name="aai_strain" value="0.9"/> 358 <param name="aai_strain" value="0.9"/>
364 <param name="ignore_thresholds" value="false"/> 359 <param name="ignore_thresholds" value="false"/>
365 <param name="e_value" value="1e-10"/> 360 <param name="e_value" value="1e-10"/>
366 <param name="length" value="0.7"/> 361 <param name="length" value="0.7"/>
367 <param name="extra_outputs" value=""/>
368 <output name="output_f7" ftype="tabular"> 362 <output name="output_f7" ftype="tabular">
369 <assert_contents> 363 <assert_contents>
370 <has_text text="Marker Id"/> 364 <has_text text="Marker Id"/>
371 <has_text text="No marker genes satisfied"/> 365 <has_text text="No marker genes satisfied"/>
372 </assert_contents> 366 </assert_contents>
397 <param name="skip_pseudogene_correction" value="false"/> 391 <param name="skip_pseudogene_correction" value="false"/>
398 <param name="aai_strain" value="0.9"/> 392 <param name="aai_strain" value="0.9"/>
399 <param name="ignore_thresholds" value="false"/> 393 <param name="ignore_thresholds" value="false"/>
400 <param name="e_value" value="1e-10"/> 394 <param name="e_value" value="1e-10"/>
401 <param name="length" value="0.7"/> 395 <param name="length" value="0.7"/>
402 <param name="extra_outputs" value=""/>
403 <output name="output_f8" ftype="tabular"> 396 <output name="output_f8" ftype="tabular">
404 <assert_contents> 397 <assert_contents>
405 <has_text text="637000110"/> 398 <has_text text="637000110"/>
406 <has_text text="AC_000091_183"/> 399 <has_text text="AC_000091_183"/>
407 <has_text text="TIGR02075,9,240"/> 400 <has_text text="TIGR02075,9,240"/>
439 <param name="skip_pseudogene_correction" value="false"/> 432 <param name="skip_pseudogene_correction" value="false"/>
440 <param name="aai_strain" value="0.9"/> 433 <param name="aai_strain" value="0.9"/>
441 <param name="ignore_thresholds" value="false"/> 434 <param name="ignore_thresholds" value="false"/>
442 <param name="e_value" value="1e-10"/> 435 <param name="e_value" value="1e-10"/>
443 <param name="length" value="0.7"/> 436 <param name="length" value="0.7"/>
444 <param name="extra_outputs" value=""/>
445 <output name="output_f9" ftype="tabular"> 437 <output name="output_f9" ftype="tabular">
446 <assert_contents> 438 <assert_contents>
447 <has_text text="637000110"/> 439 <has_text text="637000110"/>
448 <has_text text="Sequence"/> 440 <has_text text="Sequence"/>
449 <has_text text="PF06574.7"/> 441 <has_text text="PF06574.7"/>