Mercurial > repos > iuc > checkm2_build_database
diff data_manager/checkm2_datamanager.xml @ 3:6fd780865107 draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_checkm2 commit 2ae2ddbe15eb071a70355aa0738d753e8d2cdc2e
| author | iuc |
|---|---|
| date | Wed, 19 Feb 2025 13:53:44 +0000 |
| parents | 757826aa89c3 |
| children | 74c70f37dffb |
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--- a/data_manager/checkm2_datamanager.xml Sun Jan 19 18:47:59 2025 +0000 +++ b/data_manager/checkm2_datamanager.xml Wed Feb 19 13:53:44 2025 +0000 @@ -3,7 +3,7 @@ <macros> <!-- on update run a local test setting `test` to something else than "true" --> <token name="@TOOL_VERSION@">1.0.2</token> - <token name="@VERSION_SUFFIX@">0</token> + <token name="@VERSION_SUFFIX@">1</token> <token name="@PROFILE@">23.1</token> </macros> <requirements> @@ -13,7 +13,8 @@ <command detect_errors="exit_code"><![CDATA[ mkdir -p '$out_file.extra_files_path' && #if $test != "true" - checkm2 database --download --path '$out_file.extra_files_path'/ && + wget 'https://zenodo.org/records/5571251/files/checkm2_database.tar.gz' && + tar -xf 'checkm2_database.tar.gz' -C '$out_file.extra_files_path' && mv '$out_file.extra_files_path'/CheckM2_database/uniref100.KO.1.dmnd '$out_file.extra_files_path' && #else touch '$out_file.extra_files_path'/uniref100.KO.1.dmnd &&