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comparison checkm2.xml @ 2:33096c8893c3 draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/blob/main/tools/checkm2/ commit 09cdebd1cf679e0e41dbc529b86d5f148ebec3a2
author iuc
date Thu, 20 Mar 2025 06:47:07 +0000
parents 43afed10b792
children b8962c1bce40
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1:62eaf755aff3 2:33096c8893c3
1 <tool id="checkm2" name="checkm2" version="@TOOL_VERSION@+galaxy@VERSION_SUFFIX@" profile="23.1"> 1 <tool id="checkm2" name="checkm2" version="@TOOL_VERSION@+galaxy@VERSION_SUFFIX@" profile="23.1">
2 <description>Rapid assessment of genome bin quality using machine learning</description> 2 <description>Rapid assessment of genome bin quality using machine learning</description>
3 <macros> 3 <macros>
4 <!-- enable tests and output assertions on update --> 4 <!-- enable tests and output assertions on update -->
5 <token name="@TOOL_VERSION@">1.0.2</token> 5 <token name="@TOOL_VERSION@">1.0.2</token>
6 <token name="@VERSION_SUFFIX@">0</token> 6 <token name="@VERSION_SUFFIX@">1</token>
7 <token name="@IDX_DATA_TABLE@">checkm2</token> 7 <token name="@IDX_DATA_TABLE@">checkm2</token>
8 </macros> 8 </macros>
9 <xrefs> 9 <xrefs>
10 <xref type="bio.tools">checkm</xref> 10 <xref type="bio.tools">checkm</xref>
11 </xrefs> 11 </xrefs>
34 <inputs> 34 <inputs>
35 <param name="input" type="data" format="fasta" label="Input MAG/SAG datasets" multiple="true"/> 35 <param name="input" type="data" format="fasta" label="Input MAG/SAG datasets" multiple="true"/>
36 <param name="database" type="select" label="Select reference genome" help="Checkm2 Diamond database"> 36 <param name="database" type="select" label="Select reference genome" help="Checkm2 Diamond database">
37 <options from_data_table="@IDX_DATA_TABLE@"> 37 <options from_data_table="@IDX_DATA_TABLE@">
38 <filter type="sort_by" column="2"/> 38 <filter type="sort_by" column="2"/>
39 <filter type="regexp" column="1" value="1.0.2"/>
39 </options> 40 </options>
40 <validator type="no_options" message="No databases are available for this version of Checkm2. Please contact the Galaxy adminstrators to request one be installed."/> 41 <validator type="no_options" message="No databases are available for this version of Checkm2. Please contact the Galaxy adminstrators to request one be installed."/>
41 </param> 42 </param>
42 43
43 <param argument="genes" type="boolean" truevalue="--genes" falsevalue="" label="Treat input files as protein files"/> 44 <param argument="genes" type="boolean" truevalue="--genes" falsevalue="" label="Treat input files as protein files"/>