Mercurial > repos > iuc > bwameth

diff bwameth.xml @ 2:b808ce0bf29b draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tools/bwameth commit 10747839851e862ba0200061e1c99d68e009fb18
author iuc
date Sun, 12 Mar 2017 04:11:10 -0400
parents 2fa5cb67c08b
children ebcd672be8ee
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line diff
--- a/bwameth.xml	Wed Dec 21 17:49:42 2016 -0500
+++ b/bwameth.xml	Sun Mar 12 04:11:10 2017 -0400
@@ -31,7 +31,7 @@
     #else:
         $single_or_paired.input_mate1.forward $single_or_paired.input_mate1.reverse
     #end if
-    | samtools view -u - | samtools sort -@ "\${GALAXY_SLOTS:-4}" -o output.bam -
+    | samtools view -u - | samtools sort -@ "\${GALAXY_SLOTS:-4}" -T tmp -O bam -o output.bam -
 ]]>
     </command>
     <inputs>