Mercurial > repos > iuc > bwameth

comparison bwameth.xml @ 8:986033b71bbc draft

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"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bwameth commit 8d6c5d539aa6689006776c1f6b2be9067bcf9d23"
author iuc
date Sat, 27 Nov 2021 10:04:17 +0000
parents c4549c37e18e
children f5877096c5e3
comparison
equal deleted inserted replaced
7:c4549c37e18e 8:986033b71bbc
123 <outputs> 123 <outputs>
124 <data name="output" format="bam" from_work_dir="output.bam" label="${tool.name} on ${on_string}" /> 124 <data name="output" format="bam" from_work_dir="output.bam" label="${tool.name} on ${on_string}" />
125 </outputs> 125 </outputs>
126 <tests> 126 <tests>
127 <test> 127 <test>
128 <param name="referenceSource" value="history" /> 128 <conditional name="referenceSource">
129 <param name="source" value="history" />
130 </conditional>
129 <param name="reference" value="ref.fa.gz" /> 131 <param name="reference" value="ref.fa.gz" />
130 <param name="single_or_paired_opts" value="paired" /> 132 <param name="single_or_paired_opts" value="paired" />
131 <param name="input_mate1" value="t_R1.fastq.gz"/> 133 <param name="input_mate1" value="t_R1.fastq.gz"/>
132 <param name="input_mate2" value="t_R2.fastq.gz"/> 134 <param name="input_mate2" value="t_R2.fastq.gz"/>
133 <output file="output.bam" ftype="bam" name="output" lines_diff="4"/><!-- allow for HD and PG lines diff--> 135 <output file="output.bam" ftype="bam" name="output" lines_diff="4"/><!-- allow for HD and PG lines diff-->
134 </test> 136 </test>
135 <test> 137 <test>
136 <param name="referenceSource" value="history" /> 138 <conditional name="referenceSource">
139 <param name="source" value="history" />
140 </conditional>
137 <param name="reference" value="ref.fa.gz" /> 141 <param name="reference" value="ref.fa.gz" />
138 <param name="single_or_paired_opts" value="paired_collection" /> 142 <param name="single_or_paired_opts" value="paired_collection" />
139 <param name="input_mate1"> 143 <param name="input_mate1">
140 <collection type="paired"> 144 <collection type="paired">
141 <element name="forward" value="t_R1.fastq.gz"/> 145 <element name="forward" value="t_R1.fastq.gz"/>