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annotate tool-data/bwameth_indexes.loc.sample @ 3:ebcd672be8ee draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tools/bwameth commit cbf959a50b9424974905a5551ef7b3c50da4d92a
author iuc
date Tue, 11 Apr 2017 09:19:12 -0400
parents 2fa5cb67c08b
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8e1a2c5a540c planemo upload for repository https://github.com/galaxyproject/tools-iuc/tools/bwameth commit e912b80a0a6a556922a73037843600bd9de687db
iuc
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1 # This is a sample file distributed with Galaxy that is used to define a
8e1a2c5a540c planemo upload for repository https://github.com/galaxyproject/tools-iuc/tools/bwameth commit e912b80a0a6a556922a73037843600bd9de687db
iuc
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2 # list of bwa-meth indices, using three columns tab separated:
8e1a2c5a540c planemo upload for repository https://github.com/galaxyproject/tools-iuc/tools/bwameth commit e912b80a0a6a556922a73037843600bd9de687db
iuc
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3 #
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2fa5cb67c08b planemo upload for repository https://github.com/galaxyproject/tools-iuc/tools/bwameth commit f96ef202e742cc1d260bce023ae0d1e1499a11d8
iuc
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4 # <unique_build_id> <dbkey> <display_name> <genome_fasta_file_path>
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8e1a2c5a540c planemo upload for repository https://github.com/galaxyproject/tools-iuc/tools/bwameth commit e912b80a0a6a556922a73037843600bd9de687db
iuc
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5 #
8e1a2c5a540c planemo upload for repository https://github.com/galaxyproject/tools-iuc/tools/bwameth commit e912b80a0a6a556922a73037843600bd9de687db
iuc
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6 # An index can be created with the following command:
8e1a2c5a540c planemo upload for repository https://github.com/galaxyproject/tools-iuc/tools/bwameth commit e912b80a0a6a556922a73037843600bd9de687db
iuc
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7 #
8e1a2c5a540c planemo upload for repository https://github.com/galaxyproject/tools-iuc/tools/bwameth commit e912b80a0a6a556922a73037843600bd9de687db
iuc
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8 # bwameth.py index /some/path/genome.fa
8e1a2c5a540c planemo upload for repository https://github.com/galaxyproject/tools-iuc/tools/bwameth commit e912b80a0a6a556922a73037843600bd9de687db
iuc
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9 #
8e1a2c5a540c planemo upload for repository https://github.com/galaxyproject/tools-iuc/tools/bwameth commit e912b80a0a6a556922a73037843600bd9de687db
iuc
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10 # "/some/path/genome.fa" would then be the last column in the line
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2fa5cb67c08b planemo upload for repository https://github.com/galaxyproject/tools-iuc/tools/bwameth commit f96ef202e742cc1d260bce023ae0d1e1499a11d8
iuc
parents: 0
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11 # If this were for the mm10 mouse genome, the resulting entry would look like:
2fa5cb67c08b planemo upload for repository https://github.com/galaxyproject/tools-iuc/tools/bwameth commit f96ef202e742cc1d260bce023ae0d1e1499a11d8
iuc
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12 #
2fa5cb67c08b planemo upload for repository https://github.com/galaxyproject/tools-iuc/tools/bwameth commit f96ef202e742cc1d260bce023ae0d1e1499a11d8
iuc
parents: 0
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13 #mm9 mm9 Mouse (mm9) /some/path/genome.fa
2fa5cb67c08b planemo upload for repository https://github.com/galaxyproject/tools-iuc/tools/bwameth commit f96ef202e742cc1d260bce023ae0d1e1499a11d8
iuc
parents: 0
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14 #
2fa5cb67c08b planemo upload for repository https://github.com/galaxyproject/tools-iuc/tools/bwameth commit f96ef202e742cc1d260bce023ae0d1e1499a11d8
iuc
parents: 0
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15 #