Mercurial > repos > iuc > bwa_mem2
diff bwa-mem2.xml @ 6:9e5466313f1f draft default tip
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bwa_mem2 commit f7942fbad20a3378a95cb84e90ed14c31c192a4f
| author | iuc |
|---|---|
| date | Thu, 03 Apr 2025 06:50:28 +0000 |
| parents | e25b60805367 |
| children |
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--- a/bwa-mem2.xml Fri Mar 28 15:50:49 2025 +0000 +++ b/bwa-mem2.xml Thu Apr 03 06:50:28 2025 +0000 @@ -116,9 +116,9 @@ #end if #if str( $output_sort ) == "coordinate": - | samtools sort -@\${GALAXY_SLOTS:-2} -T "\${TMPDIR:-.}" -m "\${GALAXY_MEMORY_MB_PER_SLOT:-768}M" -O bam -o '$bam_output' + | samtools sort -@\${GALAXY_SLOTS:-2} -T "\${TMPDIR:-.}" -O bam -o '$bam_output' #elif str( $output_sort ) == "name": - | samtools sort -n -@\${GALAXY_SLOTS:-2} -T "\${TMPDIR:-.}" -m "\${GALAXY_MEMORY_MB_PER_SLOT:-768}M" -O bam -o '$bam_output' + | samtools sort -n -@\${GALAXY_SLOTS:-2} -T "\${TMPDIR:-.}" -O bam -o '$bam_output' #else | samtools view -@ \${GALAXY_SLOTS:-2} -bS - -o '$bam_output' #end if