Mercurial > repos > iuc > busco

comparison test-data/transcriptome_results/short_summary @ 6:cb3bd277ea3a draft

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
"planemo upload commit 22186dcfbe33d17fabd4a3c4fa39d4313978fc9c"
author iuc
date Mon, 17 Aug 2020 10:49:46 +0000
parents d010a90f588e
children d9ecc5fbbe84
comparison
equal deleted inserted replaced
5:c09583c2d78c 6:cb3bd277ea3a
1 # BUSCO version is: 3.0.2 1 # BUSCO version is: 4.1.2
2 # The lineage dataset is: N/A (Creation date: N/A, number of species: N/A, number of BUSCOs: N/A) 2 # The lineage dataset is: arthropoda_odb10 (Creation date: 2019-11-20, number of species: 90, number of BUSCOs: 1013)
3 # To reproduce this run: python /tmp/tmpCgx5rU/job_working_directory/000/6/conda-env/bin/BUSCO.py -i /tmp/tmpCgx5rU/files/000/dataset_9.dat -o busco_galaxy -l /home/abretaud/iuc_tools_abretaud/tools/busco/test-data/arthropoda/ -m tran -c 1 -sp generic -e 0.01 -z 3 # Summarized benchmarking in BUSCO notation for file /tmp/tmpsafr8yho/files/9/9/2/dataset_9922e6bd-50c2-4b64-8e36-70b9b9c3f8ed.dat
4 #
5 # Summarized benchmarking in BUSCO notation for file /tmp/tmpCgx5rU/files/000/dataset_9.dat
6 # BUSCO was run in mode: transcriptome 4 # BUSCO was run in mode: transcriptome
7 5
8 C:0.0%[S:0.0%,D:0.0%],F:0.0%,M:100.0%,n:1 6 ***** Results: *****
9 7
10 0 Complete BUSCOs (C) 8 C:0.1%[S:0.1%,D:0.0%],F:0.0%,M:99.9%,n:1013
11 0 Complete and single-copy BUSCOs (S) 9 1 Complete BUSCOs (C)
12 0 Complete and duplicated BUSCOs (D) 10 1 Complete and single-copy BUSCOs (S)
13 0 Fragmented BUSCOs (F) 11 0 Complete and duplicated BUSCOs (D)
14 1 Missing BUSCOs (M) 12 0 Fragmented BUSCOs (F)
15 1 Total BUSCO groups searched 13 1012 Missing BUSCOs (M)
14 1013 Total BUSCO groups searched