Mercurial > repos > iuc > busco
comparison macros.xml @ 13:224b7e7c7922 draft
"planemo upload commit 2adcb199f279b9ea1c3896a1f7a5b8cd9311228b"
| author | iuc |
|---|---|
| date | Fri, 05 Nov 2021 08:41:02 +0000 |
| parents | fb7427b8dbc5 |
| children | 0828207b925d |
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| 12:fb7427b8dbc5 | 13:224b7e7c7922 |
|---|---|
| 1 <?xml version="1.0"?> | 1 <?xml version="1.0"?> |
| 2 <macros> | 2 <macros> |
| 3 <token name="@TOOL_VERSION@">5.2.2</token> | 3 <token name="@TOOL_VERSION@">5.2.2</token> |
| 4 <token name="@VERSION_SUFFIX@">1</token> | 4 <token name="@VERSION_SUFFIX@">2</token> |
| 5 | 5 |
| 6 <xml name="citations"> | 6 <xml name="citations"> |
| 7 <citations> | 7 <citations> |
| 8 <citation type="doi">10.1093/bioinformatics/btv351</citation> | 8 <citation type="doi">10.1093/bioinformatics/btv351</citation> |
| 9 </citations> | 9 </citations> |
| 12 <xml name="augustus_species"> | 12 <xml name="augustus_species"> |
| 13 <!-- If you update this list, please also update it in maker and augustus tools (../maker/maker.xml and ../augustus/augustus.xml) --> | 13 <!-- If you update this list, please also update it in maker and augustus tools (../maker/maker.xml and ../augustus/augustus.xml) --> |
| 14 <option value="human">Homo sapiens</option> | 14 <option value="human">Homo sapiens</option> |
| 15 <option value="fly">Drosophila melanogaster</option> | 15 <option value="fly">Drosophila melanogaster</option> |
| 16 <option value="arabidopsis">Arabidopsis thaliana</option> | 16 <option value="arabidopsis">Arabidopsis thaliana</option> |
| 17 <option value="brugia ">Brugia malayi</option> | |
| 18 <option value="aedes">Aedes aegypti</option> | 17 <option value="aedes">Aedes aegypti</option> |
| 19 <option value="tribolium2012">Tribolium castaneum</option> | 18 <option value="tribolium2012">Tribolium castaneum</option> |
| 20 <option value="schistosoma">Schistosoma mansoni</option> | 19 <option value="schistosoma">Schistosoma mansoni</option> |
| 21 <option value="tetrahymena">Tetrahymena thermophila</option> | 20 <option value="tetrahymena">Tetrahymena thermophila</option> |
| 22 <option value="galdieria">Galdieria sulphuraria</option> | 21 <option value="galdieria">Galdieria sulphuraria</option> |
| 23 <option value="maize">Zea mays</option> | 22 <option value="maize">Zea mays</option> |
| 24 <option value="toxoplasma">Toxoplasma gondii</option> | 23 <option value="toxoplasma">Toxoplasma gondii</option> |
| 25 <option value="caenorhabditis ">Caenorhabditis elegans</option> | 24 <option value="caenorhabditis">Caenorhabditis elegans</option> |
| 26 <option value="aspergillus_fumigatus">Aspergillus fumigatus</option> | 25 <option value="aspergillus_fumigatus">Aspergillus fumigatus</option> |
| 27 <option value="aspergillus_nidulans ">Aspergillus nidulans</option> | 26 <option value="aspergillus_nidulans">Aspergillus nidulans</option> |
| 28 <option value="aspergillus_oryzae ">Aspergillus oryzae</option> | 27 <option value="aspergillus_oryzae">Aspergillus oryzae</option> |
| 29 <option value="aspergillus_terreus">Aspergillus terreus</option> | 28 <option value="aspergillus_terreus">Aspergillus terreus</option> |
| 30 <option value="botrytis_cinerea ">Botrytis cinerea</option> | 29 <option value="botrytis_cinerea">Botrytis cinerea</option> |
| 31 <option value="candida_albicans ">Candida albicans</option> | 30 <option value="candida_albicans">Candida albicans</option> |
| 32 <option value="candida_guilliermondii ">Candida guilliermondii</option> | 31 <option value="candida_guilliermondii">Candida guilliermondii</option> |
| 33 <option value="candida_tropicalis ">Candida tropicalis</option> | 32 <option value="candida_tropicalis">Candida tropicalis</option> |
| 34 <option value="chaetomium_globosum">Chaetomium globosum</option> | 33 <option value="chaetomium_globosum">Chaetomium globosum</option> |
| 35 <option value="coccidioides_immitis">Coccidioides immitis</option> | 34 <option value="coccidioides_immitis">Coccidioides immitis</option> |
| 36 <option value="coprinus">Coprinus cinereus</option> | |
| 37 <option value="coprinus_cinereus">Coprinus cinereus</option> | 35 <option value="coprinus_cinereus">Coprinus cinereus</option> |
| 38 <option value="cryptococcus_neoformans_gattii">Cryptococcus neoformans gattii</option> | 36 <option value="cryptococcus_neoformans_gattii">Cryptococcus neoformans gattii</option> |
| 39 <option value="cryptococcus_neoformans_neoformans_B">Cryptococcus neoformans neoformans</option> | 37 <option value="cryptococcus_neoformans_neoformans_B">Cryptococcus neoformans neoformans B</option> |
| 40 <option value="cryptococcus_neoformans_neoformans_JEC21">Cryptococcus neoformans neoformans</option> | 38 <option value="cryptococcus_neoformans_neoformans_JEC21">Cryptococcus neoformans neoformans JEC21</option> |
| 41 <option value="cryptococcus">Cryptococcus neoformans</option> | |
| 42 <option value="debaryomyces_hansenii">Debaryomyces hansenii</option> | 39 <option value="debaryomyces_hansenii">Debaryomyces hansenii</option> |
| 43 <option value="encephalitozoon_cuniculi_GB">Encephalitozoon cuniculi</option> | 40 <option value="encephalitozoon_cuniculi_GB">Encephalitozoon cuniculi</option> |
| 44 <option value="eremothecium_gossypii">Eremothecium gossypii</option> | 41 <option value="eremothecium_gossypii">Eremothecium gossypii</option> |
| 45 <option value="fusarium_graminearum ">Fusarium graminearum</option> | 42 <option value="fusarium_graminearum">Fusarium graminearum</option> |
| 46 <option value="histoplasma_capsulatum ">Histoplasma capsulatum</option> | 43 <option value="histoplasma_capsulatum">Histoplasma capsulatum</option> |
| 47 <option value="histoplasma">Histoplasma capsulatum</option> | 44 <option value="kluyveromyces_lactis">Kluyveromyces lactis</option> |
| 48 <option value="kluyveromyces_lactis ">Kluyveromyces lactis</option> | 45 <option value="laccaria_bicolor">Laccaria bicolor</option> |
| 49 <option value="laccaria_bicolor ">Laccaria bicolor</option> | |
| 50 <option value="lamprey">Petromyzon marinus</option> | 46 <option value="lamprey">Petromyzon marinus</option> |
| 51 <option value="leishmania_tarentolae">Leishmania tarentolae</option> | 47 <option value="leishmania_tarentolae">Leishmania tarentolae</option> |
| 52 <option value="lodderomyces_elongisporus">Lodderomyces elongisporus</option> | 48 <option value="lodderomyces_elongisporus">Lodderomyces elongisporus</option> |
| 53 <option value="magnaporthe_grisea ">Magnaporthe grisea</option> | 49 <option value="magnaporthe_grisea">Magnaporthe grisea</option> |
| 54 <option value="neurospora_crassa">Neurospora crassa</option> | 50 <option value="neurospora_crassa">Neurospora crassa</option> |
| 55 <option value="phanerochaete_chrysosporium">Phanerochaete chrysosporium</option> | 51 <option value="phanerochaete_chrysosporium">Phanerochaete chrysosporium</option> |
| 56 <option value="pichia_stipitis">Pichia stipitis</option> | 52 <option value="pichia_stipitis">Pichia stipitis</option> |
| 57 <option value="rhizopus_oryzae">Rhizopus oryzae</option> | 53 <option value="rhizopus_oryzae">Rhizopus oryzae</option> |
| 58 <option value="saccharomyces_cerevisiae_S288C">Saccharomyces cerevisiae</option> | 54 <option value="saccharomyces_cerevisiae_S288C">Saccharomyces cerevisiae S288C</option> |
| 59 <option value="saccharomyces_cerevisiae_rm11-1a_1">Saccharomyces cerevisiae</option> | 55 <option value="saccharomyces_cerevisiae_rm11-1a_1">Saccharomyces cerevisiae rm11-1a_1</option> |
| 60 <option value="saccharomyces">Saccharomyces cerevisiae</option> | 56 <option value="saccharomyces">Saccharomyces cerevisiae</option> |
| 61 <option value="schizosaccharomyces_pombe">Schizosaccharomyces pombe</option> | 57 <option value="schizosaccharomyces_pombe">Schizosaccharomyces pombe</option> |
| 62 <option value="trichinella">Trichinella spiralis</option> | 58 <option value="trichinella">Trichinella spiralis</option> |
| 63 <option value="ustilago_maydis">Ustilago maydis</option> | 59 <option value="ustilago_maydis">Ustilago maydis</option> |
| 64 <option value="yarrowia_lipolytica">Yarrowia lipolytica</option> | 60 <option value="yarrowia_lipolytica">Yarrowia lipolytica</option> |
| 77 <option value="coyote_tobacco">Coyote tobacco</option> | 73 <option value="coyote_tobacco">Coyote tobacco</option> |
| 78 <option value="s_aureus">Staphylococcus aureus</option> | 74 <option value="s_aureus">Staphylococcus aureus</option> |
| 79 <option value="thermoanaerobacter_tengcongensis">Thermoanaerobacter tengcongensis</option> | 75 <option value="thermoanaerobacter_tengcongensis">Thermoanaerobacter tengcongensis</option> |
| 80 <option value="wheat">wheat</option> | 76 <option value="wheat">wheat</option> |
| 81 <option value="zebrafish">Danio rerio</option> | 77 <option value="zebrafish">Danio rerio</option> |
| 82 <option value="anidulans">Aspergillus nidulans</option> | |
| 83 <option value="bombus_impatiens1">Bombus impatiens1</option> | 78 <option value="bombus_impatiens1">Bombus impatiens1</option> |
| 84 <option value="bombus_terrestris2">Bombus terrestris2</option> | 79 <option value="bombus_terrestris2">Bombus terrestris2</option> |
| 85 <option value="botrytis_cinerea">Botrytis cinerea</option> | |
| 86 <option value="brugia_malayi">Brugia malayi</option> | 80 <option value="brugia_malayi">Brugia malayi</option> |
| 87 <option value="conidiobolus_coronatus">Conidiobolus coronatus</option> | 81 <option value="conidiobolus_coronatus">Conidiobolus coronatus</option> |
| 88 <option value="cryptococcus_neoformans">Cryptococcus neoformans</option> | 82 <option value="cryptococcus_neoformans">Cryptococcus neoformans</option> |
| 89 <option value="culex_pipiens">Culex pipiens</option> | 83 <option value="culex_pipiens">Culex pipiens</option> |
| 90 <option value="elephant_shark">Callorhinchus milii</option> | 84 <option value="elephant_shark">Callorhinchus milii</option> |
| 91 <option value="honeybee1">Apis mellifera</option> | 85 <option value="honeybee1">Apis mellifera</option> |
| 92 <option value="phanerochaete_chrysosporium">Phanerochaete chrysosporium</option> | |
| 93 <option value="pea_aphid">Acyrthosiphon pisum</option> | 86 <option value="pea_aphid">Acyrthosiphon pisum</option> |
| 94 <option value="rhodnius_prolixus">Rhodnius prolixus</option> | 87 <option value="rhodnius_prolixus">Rhodnius prolixus</option> |
| 95 <option value="ustilago_maydis">Ustilago maydis</option> | |
| 96 <option value="verticillium_albo_atrum1">Verticillium albo atrum1</option> | 88 <option value="verticillium_albo_atrum1">Verticillium albo atrum1</option> |
| 97 <option value="verticillium_longisporum1">Verticillium longisporum1</option> | 89 <option value="verticillium_longisporum1">Verticillium longisporum1</option> |
| 98 <option value="Xipophorus_maculatus">Xipophorus_maculatus</option> | 90 <option value="Xipophorus_maculatus">Xipophorus_maculatus</option> |
| 99 <option value="adorsata">adorsata</option> | 91 <option value="adorsata">adorsata</option> |
| 100 <option value="ancylostoma_ceylanicum">ancylostoma_ceylanicum</option> | 92 <option value="ancylostoma_ceylanicum">ancylostoma_ceylanicum</option> |