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comparison busco.xml @ 4:0dac595e58a6 draft

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planemo upload commit 85b6db2b28551a663821655c13134b47290140d2
author iuc
date Mon, 13 May 2019 09:16:51 -0400
parents fe39db248196
children c09583c2d78c
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3:fe39db248196 4:0dac595e58a6
1 <tool id="busco" name="Busco" version="@TOOL_VERSION@+galaxy0"> 1 <tool id="busco" name="Busco" version="@TOOL_VERSION@+galaxy1">
2 <description>assess genome assembly and annotation completeness</description> 2 <description>assess genome assembly and annotation completeness</description>
3 <macros> 3 <macros>
4 <token name="@TOOL_VERSION@">3.0.2</token> 4 <token name="@TOOL_VERSION@">3.0.2</token>
5 </macros> 5 </macros>
6 <requirements> 6 <requirements>
7 <requirement type="package" version="@TOOL_VERSION@">busco</requirement> 7 <requirement type="package" version="@TOOL_VERSION@">busco</requirement>
8 <requirement type="package" version="3.5.1">r-base</requirement> 8 <requirement type="package" version="3.5.1">r-base</requirement>
9 <requirement type="package" version="3.3.2">augustus</requirement>
9 </requirements> 10 </requirements>
10 <command><![CDATA[ 11 <command><![CDATA[
11 export BUSCO_CONFIG_FILE='busco_config.ini' && 12 export BUSCO_CONFIG_FILE='busco_config.ini' &&
12 if [ -z "\$AUGUSTUS_CONFIG_PATH" ] ; then BUSCO_PATH=\$(dirname \$(which run_BUSCO.py)) ; export AUGUSTUS_CONFIG_PATH=\$(realpath \${BUSCO_PATH}/../config) ; fi && 13 if [ -z "\$AUGUSTUS_CONFIG_PATH" ] ; then BUSCO_PATH=\$(dirname \$(which run_BUSCO.py)) ; export AUGUSTUS_CONFIG_PATH=\$(realpath \${BUSCO_PATH}/../config) ; fi &&
13 cp -r "\$AUGUSTUS_CONFIG_PATH/" augustus_dir/ && 14 cp -r "\$AUGUSTUS_CONFIG_PATH/" augustus_dir/ &&