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comparison brew3r_r.xml @ 2:448beaf9deb8 draft default tip

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/brew3r_r commit d287d5688e57f4154d5875789e0cd4d5c87f11ce
author iuc
date Thu, 03 Oct 2024 22:35:41 +0000
parents a0708b9d33be
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1:a0708b9d33be 2:448beaf9deb8
1 <tool id="brew3r_r" name="BREW3R.r" version="@TOOL_VERSION@+galaxy@VERSION_SUFFIX@" profile="20.01" license="MIT"> 1 <tool id="brew3r_r" name="BREW3R.r" version="@TOOL_VERSION@+galaxy@VERSION_SUFFIX@" profile="20.01" license="MIT">
2 <description>Extend GTF</description> 2 <description>Extend GTF</description>
3 <macros> 3 <macros>
4 <token name="@TOOL_VERSION@">1.0.2</token> 4 <token name="@TOOL_VERSION@">1.0.2</token>
5 <token name="@VERSION_SUFFIX@">0</token> 5 <token name="@VERSION_SUFFIX@">1</token>
6 </macros> 6 </macros>
7 <xrefs> 7 <xrefs>
8 <xref type="bio.tools">brew3r.r</xref> 8 <xref type="bio.tools">brew3r.r</xref>
9 <xref type="bioconductor">BREW3R.r</xref> 9 <xref type="bioconductor">BREW3R.r</xref>
10 </xrefs> 10 </xrefs>
63 <tests> 63 <tests>
64 <test expect_num_outputs="1"> 64 <test expect_num_outputs="1">
65 <param name="gtf_to_extend" value="input.gtf"/> 65 <param name="gtf_to_extend" value="input.gtf"/>
66 <param name="gtf_to_overlap" value="second_input.gtf"/> 66 <param name="gtf_to_overlap" value="second_input.gtf"/>
67 <output name="output" value="output.gtf" compare="diff" lines_diff="2"/> 67 <output name="output" value="output.gtf" compare="diff" lines_diff="2"/>
68 </test>
69 <test expect_num_outputs="1">
70 <param name="gtf_to_extend" value="input_noexonid.gtf"/>
71 <param name="gtf_to_overlap" value="second_input.gtf"/>
72 <output name="output">
73 <assert_contents>
74 <has_n_lines n="36"/>
75 <has_text text="BREW3R"/>
76 </assert_contents>
77 </output>
68 </test> 78 </test>
69 <test expect_num_outputs="1"> 79 <test expect_num_outputs="1">
70 <param name="gtf_to_extend" value="input.gtf"/> 80 <param name="gtf_to_extend" value="input.gtf"/>
71 <param name="gtf_to_overlap" value="second_input.gtf"/> 81 <param name="gtf_to_overlap" value="second_input.gtf"/>
72 <param name="no_add" value="true"/> 82 <param name="no_add" value="true"/>