Mercurial > repos > iuc > bracken
diff est-abundance.xml @ 9:58f60dc69d49 draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bracken commit 9af8730b86781bcbbe1cb62402967fa316cfec80
| author | iuc |
|---|---|
| date | Mon, 29 Jul 2024 07:25:01 +0000 |
| parents | 7e4fde296e7c |
| children |
line wrap: on
line diff
--- a/est-abundance.xml Mon May 22 19:24:19 2023 +0000 +++ b/est-abundance.xml Mon Jul 29 07:25:01 2024 +0000 @@ -33,6 +33,8 @@ </options> </param> <param name="level" type="select" label="Level" help="Level to push all reads to"> + <option value="S2">Subspecies 2</option> + <option value="S1">Subspecies 1</option> <option value="S" selected="true">Species</option> <option value="G">Genus</option> <option value="F">Family</option> @@ -74,6 +76,20 @@ <output name="kraken_report" file="NC_011750.1_simulated_kraken_style_bracken_report.txt" ftype="tabular"/> <output name="logfile" file="test2.log" lines_diff="8"/> </test> + <test expect_num_outputs="1"> + <param name="input" value="NC_003198.1_simulated_kraken_report.txt" ftype="tabular"/> + <param name="level" value="S1"/> + <param name="kmer_distr" value="test_entry"/> + <param name="logfile_output" value="False"/> + <output name="report" file="NC_003198.1_simulated_bracken_report_S1.txt" ftype="tabular"/> + </test> + <test expect_num_outputs="1"> + <param name="input" value="NC_003198.1_simulated_kraken_report.txt" ftype="tabular"/> + <param name="level" value="S2"/> + <param name="kmer_distr" value="test_entry"/> + <param name="logfile_output" value="False"/> + <output name="report" file="NC_003198.1_simulated_bracken_report_S2.txt" ftype="tabular"/> + </test> </tests> <help> <![CDATA[