Mercurial > repos > iuc > biotradis
comparison test-data/tiny_ref.embl @ 0:bccf5ebe9b55 draft
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/biotradis commit 1c0a0f88149bf8863a89c58bace81e070b3adb5a"
| author | iuc |
|---|---|
| date | Wed, 29 Jan 2020 15:40:42 +0000 |
| parents | |
| children |
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| -1:000000000000 | 0:bccf5ebe9b55 |
|---|---|
| 1 ID CP009273; SV 1; circular; genomic DNA; STD; PRO; 4631469 BP. | |
| 2 XX | |
| 3 AC CP009273; | |
| 4 XX | |
| 5 PR Project:PRJNA257976; | |
| 6 XX | |
| 7 DT 10-SEP-2014 (Rel. 122, Created) | |
| 8 XX | |
| 9 DE Escherichia coli BW25113, complete genome. | |
| 10 XX | |
| 11 KW . | |
| 12 XX | |
| 13 OS Escherichia coli BW25113 | |
| 14 OC Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales; | |
| 15 OC Enterobacteriaceae; Escherichia. | |
| 16 XX | |
| 17 RN [1] | |
| 18 RP 1-4631469 | |
| 19 RA Grenier F., Matteau D., Baby V., Rodrigue S.; | |
| 20 RT "Complete genome sequence of Escherichia coli BW25113"; | |
| 21 RL Unpublished. | |
| 22 XX | |
| 23 CC ##Genome-Assembly-Data-START## | |
| 24 CC Assembly Method :: Newbler v. 2.6 | |
| 25 CC Reference-guided Assembly :: U00096.3 | |
| 26 CC Genome Coverage :: 100x | |
| 27 CC Sequencing Technology :: Illumina HiSeq; Sanger | |
| 28 CC ##Genome-Assembly-Data-END## | |
| 29 XX | |
| 30 FH Key Location/Qualifiers | |
| 31 FH | |
| 32 FT source 1..300 | |
| 33 FT /organism="Escherichia coli BW25113" | |
| 34 FT /strain="K-12" | |
| 35 FT /sub_strain="BW25113" | |
| 36 FT /mol_type="genomic DNA" | |
| 37 FT /country="USA:Indiana" | |
| 38 FT /collection_date="2000" | |
| 39 FT /note="from B. L. Wanner laboratory; genotype: rrnB3 | |
| 40 FT lacZ4787 hsdR514 (araBAD)567 (rhaBAD)568 rph-1" | |
| 41 FT /db_xref="taxon:679895" | |
| 42 FT /culture_collection="CGSC:7636" | |
| 43 FT gene 190..255 | |
| 44 FT /gene="thrL" | |
| 45 FT /gene_synonym="ECK0001" | |
| 46 FT /gene_synonym="JW4367" | |
| 47 FT /locus_tag="BW25113_0001" | |
| 48 FT CDS 190..255 | |
| 49 FT /codon_start=1 | |
| 50 FT /transl_table=11 | |
| 51 FT /gene="thrL" | |
| 52 FT /gene_synonym="ECK0001" | |
| 53 FT /gene_synonym="JW4367" | |
| 54 FT /locus_tag="BW25113_0001" | |
| 55 FT /product="thr operon leader peptide" | |
| 56 FT /function="leader; Amino acid biosynthesis: Threonine" | |
| 57 FT /db_xref="EnsemblGenomes-Gn:BW25113_0001" | |
| 58 FT /db_xref="EnsemblGenomes-Tr:AIN30539" | |
| 59 FT /protein_id="AIN30539.1" | |
| 60 FT /translation="MKRISTTITTTITITTGNGAG" | |
| 61 XX | |
| 62 SQ Sequence 4631469 BP; 1140509 A; 1177154 C; 1174646 G; 1139160 T; 0 other; | |
| 63 agcttttcat tctgactgca acgggcaata tgtctctgtg tggattaaaa aaagagtgtc 60 | |
| 64 tgatagcagc ttctgaactg gttacctgcc gtgagtaaat taaaatttta ttgacttagg 120 | |
| 65 tcactaaata ctttaaccaa tataggcata gcgcacagac agataaaaat tacagagtac 180 | |
| 66 acaacatcca tgaaacgcat tagcaccacc attaccacca ccatcaccat taccacaggt 240 | |
| 67 aacggtgcgg gctgacgcgt acaggaaaca cagaaaaaag cccgcacctg acagtgcggg 300 | |
| 68 // |