Mercurial > repos > iuc > biotradis

comparison bacteria_tradis.xml @ 4:86c8fb3bb521 draft default tip

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/biotradis commit 597c82a8fa756e68828ef201de7bb7e69d2c50bd
author iuc
date Mon, 04 Jul 2022 07:28:50 +0000
parents 476d4cefec3a
children
comparison
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3:476d4cefec3a 4:86c8fb3bb521
65 <param name="use" type="boolean" truevalue="yes" falsevalue="no" label="Search for a tranposon tag" help="Use with data containing a transposon tag attached to the reads. Only reads containing the transposon tag will be processed, and the tag will be removed before mapping." /> 65 <param name="use" type="boolean" truevalue="yes" falsevalue="no" label="Search for a tranposon tag" help="Use with data containing a transposon tag attached to the reads. Only reads containing the transposon tag will be processed, and the tag will be removed before mapping." />
66 66
67 <when value="yes"> 67 <when value="yes">
68 68
69 <param name="sequence" type="text" value="" help="" /> 69 <param name="sequence" type="text" value="" help="" />
70 <param name="nb_mismatches" type="integer" value="2" min="0" max="1" help="If there is evidence for low-quality bases in the transposon tag (from FastQC, for instance), setting this to 1 or 2 may result in higher recovery of insertion sites. Higher than 2 is not advisable with the typical transposon tag lengths (10 - 12 bases) produced by TraDIS protocols, but may be appropriate with protocols that produce significantly longer transposon tags." /> 70 <param name="nb_mismatches" type="integer" value="2" min="0" help="If there is evidence for low-quality bases in the transposon tag (from FastQC, for instance), setting this to 1 or 2 may result in higher recovery of insertion sites. Higher than 2 is not advisable with the typical transposon tag lengths (10 - 12 bases) produced by TraDIS protocols, but may be appropriate with protocols that produce significantly longer transposon tags." />
71 <param name="tagdir" type="select" label="Direction of the transposon tag" help="" > 71 <param name="tagdir" type="select" label="Direction of the transposon tag" help="" >
72 <option value="3" selected="true">3'</option> 72 <option value="3" selected="true">3'</option>
73 <option value="5">5bacteria_tradis.xml'</option> 73 <option value="5">5bacteria_tradis.xml'</option>
74 </param> 74 </param>
75 75