Mercurial > repos > iuc > bioext_bealign

comparison bealign.xml @ 7:3628c36b3207 draft

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"planemo upload for repository https://github.com/davebx/bioext-gx/ commit e661c4b493283da980467b0f11c5deea54a83226"
author iuc
date Sat, 27 Nov 2021 10:06:24 +0000
parents b60b6e82b9c6
children 2b4afdf6c04c
comparison
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6:19eee96bc945 7:3628c36b3207
188 </test> 188 </test>
189 <test expect_num_outputs="2"> 189 <test expect_num_outputs="2">
190 <param name="input" ftype="fasta" value="query.fa" /> 190 <param name="input" ftype="fasta" value="query.fa" />
191 <param name="reference_type" value="preset" /> 191 <param name="reference_type" value="preset" />
192 <param name="reference" value="CoV2-nsp8" /> 192 <param name="reference" value="CoV2-nsp8" />
193 <param name="add_background" value="Yes" /> 193 <conditional name="background_source">
194 <param name="background_source" value="data_table" /> 194 <param name="selection" value="data_table" />
195 </conditional>
195 <param name="sequences" value="CoV2-nsp8" /> 196 <param name="sequences" value="CoV2-nsp8" />
196 <param name="alphabet" value="codon" /> 197 <param name="alphabet" value="codon" />
197 <param name="score_matrix" value="HIV_BETWEEN_F" /> 198 <param name="score_matrix" value="HIV_BETWEEN_F" />
198 <output name="output" file="bealign-out3.bam" ftype="bam" lines_diff="2"/> 199 <output name="output" file="bealign-out3.bam" ftype="bam" lines_diff="2"/>
199 <output name="background" file="bealign-out3-background.bam" ftype="bam" lines_diff="2"/> 200 <output name="background" file="bealign-out3-background.bam" ftype="bam" lines_diff="2"/>
201 <test expect_num_outputs="2"> 202 <test expect_num_outputs="2">
202 <param name="input" ftype="fasta" value="query.fa" /> 203 <param name="input" ftype="fasta" value="query.fa" />
203 <param name="reference_type" value="preset" /> 204 <param name="reference_type" value="preset" />
204 <param name="reference" value="CoV2-nsp8" /> 205 <param name="reference" value="CoV2-nsp8" />
205 <param name="save_reference" value="true" /> 206 <param name="save_reference" value="true" />
206 <param name="add_background" value="No" />
207 <param name="alphabet" value="codon" /> 207 <param name="alphabet" value="codon" />
208 <param name="score_matrix" value="HIV_BETWEEN_F" /> 208 <param name="score_matrix" value="HIV_BETWEEN_F" />
209 <output name="output" file="bealign-out4.bam" ftype="bam" lines_diff="2"/> 209 <output name="output" file="bealign-out4.bam" ftype="bam" lines_diff="2"/>
210 <output name="saved_reference" file="reference.fa" ftype="fasta"/> 210 <output name="saved_reference" file="reference.fa" ftype="fasta"/>
211 </test> 211 </test>