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comparison binette.xml @ 5:71f4232f78db draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/tools/binette commit 166ec7bb013cbf738810ed21199e579e63c73593
author iuc
date Wed, 05 Nov 2025 13:27:32 +0000
parents c015fc9c0d39
children 65deeb301180
comparison
equal deleted inserted replaced
4:c015fc9c0d39 5:71f4232f78db
1 <tool id="binette" name="Binette" version="@TOOL_VERSION@+galaxy@VERSION_SUFFIX@" profile="@PROFILE@"> 1 <tool id="binette" name="Binette" version="@TOOL_VERSION@+galaxy@VERSION_SUFFIX@" profile="@PROFILE@">
2 <description>Binning refinement tool</description> 2 <description>Binning refinement tool</description>
3 <macros> 3 <macros>
4 <token name="@TOOL_VERSION@">1.1.1</token> 4 <token name="@TOOL_VERSION@">1.2.0</token>
5 <token name="@VERSION_SUFFIX@">0</token> 5 <token name="@VERSION_SUFFIX@">0</token>
6 <token name="@PROFILE@">24.1</token> 6 <token name="@PROFILE@">24.1</token>
7 </macros> 7 </macros>
8 <xrefs> 8 <xrefs>
9 <xref type="bio.tools">binette</xref> 9 <xref type="bio.tools">binette</xref>
32 -b input/*.tsv 32 -b input/*.tsv
33 -c 'input_contigs.fasta' 33 -c 'input_contigs.fasta'
34 #if $proteins: 34 #if $proteins:
35 -p 'input_proteins.fasta' 35 -p 'input_proteins.fasta'
36 #end if 36 #end if
37 -m ${min_completeness} 37 --min_completeness ${min_completeness}
38 -t "\${GALAXY_SLOTS:-1}" 38 -t "\${GALAXY_SLOTS:-1}"
39 -o 'output/' 39 -o 'output/'
40 -w ${contamination_weight} 40 -w ${contamination_weight}
41 #if $database_type.is_select == 'his': 41 #if $database_type.is_select == 'his':
42 --checkm2_db 'input_database.dmnd' 42 --checkm2_db 'input_database.dmnd'