Mercurial > repos > iuc > bigwig_outlier_bed

annotate README.md @ 6:3d312adb38db draft default tip

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/tools/bigwig_outlier_bed commit c579c9294e110cd0a7d7e36d6c2d61676b3a8b1a
author iuc
date Mon, 16 Feb 2026 07:46:13 +0000
parents c0fb8c61e049
children
Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
rev   line source
0
fd9e0c437169 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bigwig_outlier_bed commit 091caba3c5b066b293745ccee5cd31132fec3b4b
iuc
parents:
diff changeset
1 ## bigwig peak bed maker
fd9e0c437169 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bigwig_outlier_bed commit 091caba3c5b066b293745ccee5cd31132fec3b4b
iuc
parents:
diff changeset
2
fd9e0c437169 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bigwig_outlier_bed commit 091caba3c5b066b293745ccee5cd31132fec3b4b
iuc
parents:
diff changeset
3 ### July 30 2024 for the VGP
fd9e0c437169 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bigwig_outlier_bed commit 091caba3c5b066b293745ccee5cd31132fec3b4b
iuc
parents:
diff changeset
4
2
c0fb8c61e049 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bigwig_outlier_bed commit 3cce4c76a60b9353298fdcf759e893b8fcdfaa77
iuc
parents: 0
diff changeset
5 This is a Galaxy tool, for building some of the [NIH MARBL T2T assembly polishing](https://github.com/marbl/training) tools as Galaxy workflows.
0
fd9e0c437169 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bigwig_outlier_bed commit 091caba3c5b066b293745ccee5cd31132fec3b4b
iuc
parents:
diff changeset
6
2
c0fb8c61e049 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bigwig_outlier_bed commit 3cce4c76a60b9353298fdcf759e893b8fcdfaa77
iuc
parents: 0
diff changeset
7 JBrowse2 now includes a plugin for optional colours to distinguish bed features, shown being tested in the screenshots below.
0
fd9e0c437169 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bigwig_outlier_bed commit 091caba3c5b066b293745ccee5cd31132fec3b4b
iuc
parents:
diff changeset
8
fd9e0c437169 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bigwig_outlier_bed commit 091caba3c5b066b293745ccee5cd31132fec3b4b
iuc
parents:
diff changeset
9 ### Find and mark BigWig peaks to a bed file for display
fd9e0c437169 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bigwig_outlier_bed commit 091caba3c5b066b293745ccee5cd31132fec3b4b
iuc
parents:
diff changeset
10
fd9e0c437169 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bigwig_outlier_bed commit 091caba3c5b066b293745ccee5cd31132fec3b4b
iuc
parents:
diff changeset
11 In the spirit of DeepTools, but finding contiguous regions where the bigwig value is either above or below a given centile.
fd9e0c437169 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bigwig_outlier_bed commit 091caba3c5b066b293745ccee5cd31132fec3b4b
iuc
parents:
diff changeset
12 0.99 and 0.01 for example. These quantile cut point values are found and applied over each chromosome using some [cunning numpy code](http://gregoryzynda.com/python/numpy/contiguous/interval/2019/11/29/contiguous-regions.html)
fd9e0c437169 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bigwig_outlier_bed commit 091caba3c5b066b293745ccee5cd31132fec3b4b
iuc
parents:
diff changeset
13
fd9e0c437169 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bigwig_outlier_bed commit 091caba3c5b066b293745ccee5cd31132fec3b4b
iuc
parents:
diff changeset
14 ![image](https://github.com/fubar2/bigwig_peak_bed/assets/6016266/cdee3a2b-ae31-4282-b744-992c15fb49db)
fd9e0c437169 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bigwig_outlier_bed commit 091caba3c5b066b293745ccee5cd31132fec3b4b
iuc
parents:
diff changeset
15
fd9e0c437169 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bigwig_outlier_bed commit 091caba3c5b066b293745ccee5cd31132fec3b4b
iuc
parents:
diff changeset
16 ![image](https://github.com/fubar2/bigwig_peak_bed/assets/6016266/59d1564b-0c34-42a3-b437-44332cf1b2f0)
fd9e0c437169 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bigwig_outlier_bed commit 091caba3c5b066b293745ccee5cd31132fec3b4b
iuc
parents:
diff changeset
17
fd9e0c437169 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bigwig_outlier_bed commit 091caba3c5b066b293745ccee5cd31132fec3b4b
iuc
parents:
diff changeset
18 Big differences between chromosomes 14,15,21,22 and Y in this "all contigs" view - explanations welcomed:
fd9e0c437169 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bigwig_outlier_bed commit 091caba3c5b066b293745ccee5cd31132fec3b4b
iuc
parents:
diff changeset
19
fd9e0c437169 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bigwig_outlier_bed commit 091caba3c5b066b293745ccee5cd31132fec3b4b
iuc
parents:
diff changeset
20 ![image](https://github.com/fubar2/bigwig_peak_bed/assets/6016266/162bf681-2977-4eb8-8d6f-9dad5b3931f8)
fd9e0c437169 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bigwig_outlier_bed commit 091caba3c5b066b293745ccee5cd31132fec3b4b
iuc
parents:
diff changeset
21
fd9e0c437169 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bigwig_outlier_bed commit 091caba3c5b066b293745ccee5cd31132fec3b4b
iuc
parents:
diff changeset
22
fd9e0c437169 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bigwig_outlier_bed commit 091caba3c5b066b293745ccee5cd31132fec3b4b
iuc
parents:
diff changeset
23 [pybedtools](https://github.com/jackh726/bigtools) is used for the bigwig interface. Optionally allow
fd9e0c437169 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bigwig_outlier_bed commit 091caba3c5b066b293745ccee5cd31132fec3b4b
iuc
parents:
diff changeset
24 multiple bigwigs to be processed into a single bed - the bed features have the bigwig name in the label for viewing.
fd9e0c437169 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bigwig_outlier_bed commit 091caba3c5b066b293745ccee5cd31132fec3b4b
iuc
parents:
diff changeset
25
fd9e0c437169 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bigwig_outlier_bed commit 091caba3c5b066b293745ccee5cd31132fec3b4b
iuc
parents:
diff changeset
26 ### Note on quantiles per chromosome rather than quantiles for the whole bigwig
fd9e0c437169 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bigwig_outlier_bed commit 091caba3c5b066b293745ccee5cd31132fec3b4b
iuc
parents:
diff changeset
27
fd9e0c437169 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bigwig_outlier_bed commit 091caba3c5b066b293745ccee5cd31132fec3b4b
iuc
parents:
diff changeset
28 It is just not feasible to hold all contigs in the entire decoded bigwig in RAM to estimate quantiles. It may be
fd9e0c437169 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bigwig_outlier_bed commit 091caba3c5b066b293745ccee5cd31132fec3b4b
iuc
parents:
diff changeset
29 better to sample across all chromosomes so as not to lose any systematic differences between them - the current method will hide those
fd9e0c437169 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bigwig_outlier_bed commit 091caba3c5b066b293745ccee5cd31132fec3b4b
iuc
parents:
diff changeset
30 differences unfortunately. Sampling might be possible. Looking at the actual quantile values across a couple of test bigwigs suggests that
fd9e0c437169 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bigwig_outlier_bed commit 091caba3c5b066b293745ccee5cd31132fec3b4b
iuc
parents:
diff changeset
31 there is not much variation between chromosomes but there's now a tabular report to check them for each input bigwig.
2
c0fb8c61e049 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bigwig_outlier_bed commit 3cce4c76a60b9353298fdcf759e893b8fcdfaa77
iuc
parents: 0
diff changeset
32
c0fb8c61e049 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bigwig_outlier_bed commit 3cce4c76a60b9353298fdcf759e893b8fcdfaa77
iuc
parents: 0
diff changeset
33 ### Table reports
c0fb8c61e049 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bigwig_outlier_bed commit 3cce4c76a60b9353298fdcf759e893b8fcdfaa77
iuc
parents: 0
diff changeset
34
c0fb8c61e049 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bigwig_outlier_bed commit 3cce4c76a60b9353298fdcf759e893b8fcdfaa77
iuc
parents: 0
diff changeset
35 The optional table output report gives a crude histogram and the top/bottom 10 values to help
c0fb8c61e049 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bigwig_outlier_bed commit 3cce4c76a60b9353298fdcf759e893b8fcdfaa77
iuc
parents: 0
diff changeset
36 understand what is likely to be informative. In this example, there are 26700 zero values so
c0fb8c61e049 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bigwig_outlier_bed commit 3cce4c76a60b9353298fdcf759e893b8fcdfaa77
iuc
parents: 0
diff changeset
37 using a lower cutoff quantile is likely to have a lot of them, although a large window requirement
c0fb8c61e049 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bigwig_outlier_bed commit 3cce4c76a60b9353298fdcf759e893b8fcdfaa77
iuc
parents: 0
diff changeset
38 will decease the overload...
c0fb8c61e049 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bigwig_outlier_bed commit 3cce4c76a60b9353298fdcf759e893b8fcdfaa77
iuc
parents: 0
diff changeset
39
c0fb8c61e049 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bigwig_outlier_bed commit 3cce4c76a60b9353298fdcf759e893b8fcdfaa77
iuc
parents: 0
diff changeset
40 Descriptive measures
c0fb8c61e049 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bigwig_outlier_bed commit 3cce4c76a60b9353298fdcf759e893b8fcdfaa77
iuc
parents: 0
diff changeset
41 bigwig test
c0fb8c61e049 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bigwig_outlier_bed commit 3cce4c76a60b9353298fdcf759e893b8fcdfaa77
iuc
parents: 0
diff changeset
42 contig chr10_PATERNAL
c0fb8c61e049 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bigwig_outlier_bed commit 3cce4c76a60b9353298fdcf759e893b8fcdfaa77
iuc
parents: 0
diff changeset
43 n 135711693
c0fb8c61e049 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bigwig_outlier_bed commit 3cce4c76a60b9353298fdcf759e893b8fcdfaa77
iuc
parents: 0
diff changeset
44 mean 12.178164
c0fb8c61e049 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bigwig_outlier_bed commit 3cce4c76a60b9353298fdcf759e893b8fcdfaa77
iuc
parents: 0
diff changeset
45 std 7.997467
c0fb8c61e049 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bigwig_outlier_bed commit 3cce4c76a60b9353298fdcf759e893b8fcdfaa77
iuc
parents: 0
diff changeset
46 min 0.000000
c0fb8c61e049 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bigwig_outlier_bed commit 3cce4c76a60b9353298fdcf759e893b8fcdfaa77
iuc
parents: 0
diff changeset
47 max 365.000000
c0fb8c61e049 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bigwig_outlier_bed commit 3cce4c76a60b9353298fdcf759e893b8fcdfaa77
iuc
parents: 0
diff changeset
48 qtop 364.00
c0fb8c61e049 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bigwig_outlier_bed commit 3cce4c76a60b9353298fdcf759e893b8fcdfaa77
iuc
parents: 0
diff changeset
49 qbot noqlo
c0fb8c61e049 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bigwig_outlier_bed commit 3cce4c76a60b9353298fdcf759e893b8fcdfaa77
iuc
parents: 0
diff changeset
50 First/Last 10 value counts
c0fb8c61e049 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bigwig_outlier_bed commit 3cce4c76a60b9353298fdcf759e893b8fcdfaa77
iuc
parents: 0
diff changeset
51 Value Count
c0fb8c61e049 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bigwig_outlier_bed commit 3cce4c76a60b9353298fdcf759e893b8fcdfaa77
iuc
parents: 0
diff changeset
52 0.00 26700
c0fb8c61e049 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bigwig_outlier_bed commit 3cce4c76a60b9353298fdcf759e893b8fcdfaa77
iuc
parents: 0
diff changeset
53 1.00 82900
c0fb8c61e049 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bigwig_outlier_bed commit 3cce4c76a60b9353298fdcf759e893b8fcdfaa77
iuc
parents: 0
diff changeset
54 2.00 261400
c0fb8c61e049 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bigwig_outlier_bed commit 3cce4c76a60b9353298fdcf759e893b8fcdfaa77
iuc
parents: 0
diff changeset
55 3.00 676993
c0fb8c61e049 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bigwig_outlier_bed commit 3cce4c76a60b9353298fdcf759e893b8fcdfaa77
iuc
parents: 0
diff changeset
56 4.00 1665500
c0fb8c61e049 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bigwig_outlier_bed commit 3cce4c76a60b9353298fdcf759e893b8fcdfaa77
iuc
parents: 0
diff changeset
57 5.00 3125700
c0fb8c61e049 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bigwig_outlier_bed commit 3cce4c76a60b9353298fdcf759e893b8fcdfaa77
iuc
parents: 0
diff changeset
58 6.00 5078000
c0fb8c61e049 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bigwig_outlier_bed commit 3cce4c76a60b9353298fdcf759e893b8fcdfaa77
iuc
parents: 0
diff changeset
59 7.00 7469000
c0fb8c61e049 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bigwig_outlier_bed commit 3cce4c76a60b9353298fdcf759e893b8fcdfaa77
iuc
parents: 0
diff changeset
60 8.00 10191700
c0fb8c61e049 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bigwig_outlier_bed commit 3cce4c76a60b9353298fdcf759e893b8fcdfaa77
iuc
parents: 0
diff changeset
61 9.00 12544600
c0fb8c61e049 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bigwig_outlier_bed commit 3cce4c76a60b9353298fdcf759e893b8fcdfaa77
iuc
parents: 0
diff changeset
62 355.00 100
c0fb8c61e049 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bigwig_outlier_bed commit 3cce4c76a60b9353298fdcf759e893b8fcdfaa77
iuc
parents: 0
diff changeset
63 356.00 100
c0fb8c61e049 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bigwig_outlier_bed commit 3cce4c76a60b9353298fdcf759e893b8fcdfaa77
iuc
parents: 0
diff changeset
64 357.00 300
c0fb8c61e049 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bigwig_outlier_bed commit 3cce4c76a60b9353298fdcf759e893b8fcdfaa77
iuc
parents: 0
diff changeset
65 358.00 100
c0fb8c61e049 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bigwig_outlier_bed commit 3cce4c76a60b9353298fdcf759e893b8fcdfaa77
iuc
parents: 0
diff changeset
66 360.00 500
c0fb8c61e049 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bigwig_outlier_bed commit 3cce4c76a60b9353298fdcf759e893b8fcdfaa77
iuc
parents: 0
diff changeset
67 361.00 300
c0fb8c61e049 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bigwig_outlier_bed commit 3cce4c76a60b9353298fdcf759e893b8fcdfaa77
iuc
parents: 0
diff changeset
68 362.00 200
c0fb8c61e049 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bigwig_outlier_bed commit 3cce4c76a60b9353298fdcf759e893b8fcdfaa77
iuc
parents: 0
diff changeset
69 363.00 600
c0fb8c61e049 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bigwig_outlier_bed commit 3cce4c76a60b9353298fdcf759e893b8fcdfaa77
iuc
parents: 0
diff changeset
70 364.00 900
c0fb8c61e049 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bigwig_outlier_bed commit 3cce4c76a60b9353298fdcf759e893b8fcdfaa77
iuc
parents: 0
diff changeset
71 365.00 700
c0fb8c61e049 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bigwig_outlier_bed commit 3cce4c76a60b9353298fdcf759e893b8fcdfaa77
iuc
parents: 0
diff changeset
72 Histogram of bigwig values
c0fb8c61e049 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bigwig_outlier_bed commit 3cce4c76a60b9353298fdcf759e893b8fcdfaa77
iuc
parents: 0
diff changeset
73 chr10_PATERNAL 18.25 | 127,047,593 | **************************************************************************
c0fb8c61e049 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bigwig_outlier_bed commit 3cce4c76a60b9353298fdcf759e893b8fcdfaa77
iuc
parents: 0
diff changeset
74 chr10_PATERNAL 36.50 | 7,510,000 | ****
c0fb8c61e049 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bigwig_outlier_bed commit 3cce4c76a60b9353298fdcf759e893b8fcdfaa77
iuc
parents: 0
diff changeset
75 chr10_PATERNAL 54.75 | 818,900 |
c0fb8c61e049 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bigwig_outlier_bed commit 3cce4c76a60b9353298fdcf759e893b8fcdfaa77
iuc
parents: 0
diff changeset
76 chr10_PATERNAL 73.00 | 117,200 |
c0fb8c61e049 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bigwig_outlier_bed commit 3cce4c76a60b9353298fdcf759e893b8fcdfaa77
iuc
parents: 0
diff changeset
77 chr10_PATERNAL 91.25 | 51,900 |
c0fb8c61e049 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bigwig_outlier_bed commit 3cce4c76a60b9353298fdcf759e893b8fcdfaa77
iuc
parents: 0
diff changeset
78 chr10_PATERNAL 109.50 | 44,200 |
c0fb8c61e049 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bigwig_outlier_bed commit 3cce4c76a60b9353298fdcf759e893b8fcdfaa77
iuc
parents: 0
diff changeset
79 chr10_PATERNAL 127.75 | 21,600 |
c0fb8c61e049 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bigwig_outlier_bed commit 3cce4c76a60b9353298fdcf759e893b8fcdfaa77
iuc
parents: 0
diff changeset
80 chr10_PATERNAL 146.00 | 17,900 |
c0fb8c61e049 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bigwig_outlier_bed commit 3cce4c76a60b9353298fdcf759e893b8fcdfaa77
iuc
parents: 0
diff changeset
81 chr10_PATERNAL 164.25 | 16,400 |
c0fb8c61e049 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bigwig_outlier_bed commit 3cce4c76a60b9353298fdcf759e893b8fcdfaa77
iuc
parents: 0
diff changeset
82 chr10_PATERNAL 182.50 | 18,600 |
c0fb8c61e049 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bigwig_outlier_bed commit 3cce4c76a60b9353298fdcf759e893b8fcdfaa77
iuc
parents: 0
diff changeset
83 chr10_PATERNAL 200.75 | 5,400 |
c0fb8c61e049 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bigwig_outlier_bed commit 3cce4c76a60b9353298fdcf759e893b8fcdfaa77
iuc
parents: 0
diff changeset
84 chr10_PATERNAL 219.00 | 6,600 |
c0fb8c61e049 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bigwig_outlier_bed commit 3cce4c76a60b9353298fdcf759e893b8fcdfaa77
iuc
parents: 0
diff changeset
85 chr10_PATERNAL 237.25 | 6,200 |
c0fb8c61e049 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bigwig_outlier_bed commit 3cce4c76a60b9353298fdcf759e893b8fcdfaa77
iuc
parents: 0
diff changeset
86 chr10_PATERNAL 255.50 | 3,900 |
c0fb8c61e049 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bigwig_outlier_bed commit 3cce4c76a60b9353298fdcf759e893b8fcdfaa77
iuc
parents: 0
diff changeset
87 chr10_PATERNAL 273.75 | 4,500 |
c0fb8c61e049 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bigwig_outlier_bed commit 3cce4c76a60b9353298fdcf759e893b8fcdfaa77
iuc
parents: 0
diff changeset
88 chr10_PATERNAL 292.00 | 7,100 |
c0fb8c61e049 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bigwig_outlier_bed commit 3cce4c76a60b9353298fdcf759e893b8fcdfaa77
iuc
parents: 0
diff changeset
89 chr10_PATERNAL 310.25 | 3,000 |
c0fb8c61e049 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bigwig_outlier_bed commit 3cce4c76a60b9353298fdcf759e893b8fcdfaa77
iuc
parents: 0
diff changeset
90 chr10_PATERNAL 328.50 | 2,700 |
c0fb8c61e049 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bigwig_outlier_bed commit 3cce4c76a60b9353298fdcf759e893b8fcdfaa77
iuc
parents: 0
diff changeset
91 chr10_PATERNAL 346.75 | 3,500 |
c0fb8c61e049 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bigwig_outlier_bed commit 3cce4c76a60b9353298fdcf759e893b8fcdfaa77
iuc
parents: 0
diff changeset
92 chr10_PATERNAL 365.00 | 4,500 |
c0fb8c61e049 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bigwig_outlier_bed commit 3cce4c76a60b9353298fdcf759e893b8fcdfaa77
iuc
parents: 0
diff changeset
93 chr10_PATERNAL ------------ |------------ |
c0fb8c61e049 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bigwig_outlier_bed commit 3cce4c76a60b9353298fdcf759e893b8fcdfaa77
iuc
parents: 0
diff changeset
94 chr10_PATERNAL N= | 135,711,693 |
c0fb8c61e049 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bigwig_outlier_bed commit 3cce4c76a60b9353298fdcf759e893b8fcdfaa77
iuc
parents: 0
diff changeset
95 chr10_PATERNAL ------------ |------------ |
c0fb8c61e049 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bigwig_outlier_bed commit 3cce4c76a60b9353298fdcf759e893b8fcdfaa77
iuc
parents: 0
diff changeset
96
c0fb8c61e049 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bigwig_outlier_bed commit 3cce4c76a60b9353298fdcf759e893b8fcdfaa77
iuc
parents: 0
diff changeset
97