Mercurial > repos > iuc > bedtools

diff getfastaBed.xml @ 64:f6c88d2e9ae5 draft default tip

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bedtools commit 73ebd55430874a3c1483b6dd6cce0482175482f9
author iuc
date Fri, 21 Feb 2025 21:38:34 +0000
parents 9f6bd4c9479f
children
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--- a/getfastaBed.xml	Thu Mar 02 08:50:31 2023 +0000
+++ b/getfastaBed.xml	Fri Feb 21 21:38:34 2025 +0000
@@ -1,4 +1,4 @@
-<tool id="bedtools_getfastabed" name="bedtools getfasta" version="@TOOL_VERSION@+galaxy1" profile="@PROFILE@">
+<tool id="bedtools_getfastabed" name="bedtools getfasta" version="@TOOL_VERSION@+galaxy0" profile="@PROFILE@">
     <description>use intervals to extract sequences from a FASTA file</description>
     <macros>
         <import>macros.xml</import>
@@ -61,7 +61,7 @@
     <tests>
         <test>
             <param name="input" value="nucBed1.bed" ftype="bed" />
-            <param name="fasta" value="nucBed1.fasta" ftype="fasta" />
+            <param name="fasta_source|fasta" value="nucBed1.fasta" ftype="fasta" />
             <param name="tab" value="False" />
             <param name="split" value="False" />
             <param name="nameOnly" value="False" />
@@ -69,7 +69,7 @@
         </test>
         <test>
             <param name="input" value="nucBed1.bed" ftype="bed" />
-            <param name="fasta" value="nucBed1.fasta" ftype="fasta" />
+            <param name="fasta_source|fasta" value="nucBed1.fasta" ftype="fasta" />
             <param name="tab" value="True" />
             <param name="split" value="False" />
             <param name="nameOnly" value="False" />
@@ -77,7 +77,7 @@
         </test>
         <test>
             <param name="input" value="nucBed1.bed" ftype="bed" />
-            <param name="fasta" value="nucBed1.fasta" ftype="fasta" />
+            <param name="fasta_source|fasta" value="nucBed1.fasta" ftype="fasta" />
             <param name="tab" value="False" />
             <param name="split" value="False" />
             <param name="name" value="True" />
@@ -85,7 +85,7 @@
         </test>
         <test>
             <param name="input" value="nucBed2.bed" ftype="bed" />
-            <param name="fasta" value="nucBed1.fasta" ftype="fasta" />
+            <param name="fasta_source|fasta" value="nucBed1.fasta" ftype="fasta" />
             <param name="tab" value="False" />
             <param name="split" value="False" />
             <param name="nameOnly" value="True" />
@@ -93,8 +93,8 @@
         </test>
         <test>
             <param name="input" value="nucBed2.bed" ftype="bed" />
-            <param name="fasta_source_selector" value="preloaded"/>
-            <param name="fasta_id" value="testid" />
+            <param name="fasta_source|fasta_source_selector" value="preloaded"/>
+            <param name="fasta_source|fasta_id" value="testid" />
             <param name="tab" value="False" />
             <param name="split" value="False" />
             <param name="nameOnly" value="True" />