diff randomBed.xml @ 6:e715c92702d5 draft

Uploaded
author iuc
date Thu, 26 Feb 2015 22:41:43 -0500
parents 315929597efb
children
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--- a/randomBed.xml	Wed Feb 25 22:42:21 2015 -0500
+++ b/randomBed.xml	Thu Feb 26 22:41:43 2015 -0500
@@ -11,7 +11,7 @@
         -g $genome
         -l $length
         -n $intervals
-        #if $seed.seed_choose:
+        #if str($seed.seed_choose) == "True":
             -seed $seed.seed
         #end if
         > "$output"
@@ -35,6 +35,18 @@
             <param name="intervals" value="3" />
             <output name="output" file="randomBed_result1.bed" ftype="bed" />
         </test>
+	<test>
+	    <param name="genome" value="mm9_chr1.len" />
+            <param name="seed_choose" value="False" />
+            <param name="length" value="5" />
+            <param name="intervals" value="3" />
+            <output name="output">
+	      <assert_contents>
+		<has_text_matching expression="chr1" />
+		<has_n_columns n="6" />
+	      </assert_contents>
+	    </output>
+	</test>
     </tests>
     <help>
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