--- a/macros.xml	Tue Jul 15 14:42:23 2014 -0400
+++ b/macros.xml	Fri Aug 08 18:17:59 2014 -0400
@@ -76,12 +76,15 @@
     <token name="@REFERENCES@">
 ------
 
-This tool is part of the `bedtools package`__ from the `Quinlan laboratory`__.
-If you use this tool, please cite `Quinlan AR, and Hall I.M. BEDTools: A flexible framework for comparing genomic features. Bioinformatics, 2010, 26, 6.`__
+This tool is part of the `bedtools package`_ from the `Quinlan laboratory`_.
+
+.. _bedtools package: https://github.com/arq5x/bedtools2
+.. _Quinlan laboratory: http://cphg.virginia.edu/quinlan/
 
-.. __: https://github.com/arq5x/bedtools2
-.. __: http://cphg.virginia.edu/quinlan/
-.. __: http://bioinformatics.oxfordjournals.org/content/26/6/841.short
-.. __: http://bedtools.readthedocs.org/en/latest/content/bedtools-suite.html
     </token>
+    <xml name="citations">
+        <citations>
+            <citation type="doi">10.1093/bioinformatics/btq033</citation>
+        </citations>
+    </xml>
 </macros>