Mercurial > repos > iuc > bedtools

diff annotateBed.xml @ 18:5efc48568d8d draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bedtools commit e5a5ad091c621348dc6ce2df861475ebc54a380e
author iuc
date Tue, 13 Oct 2015 17:20:34 -0400
parents a2d4c30ba2f9
children c0fbce5dc84a
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line diff
--- a/annotateBed.xml	Sun Jun 21 22:49:46 2015 -0400
+++ b/annotateBed.xml	Tue Oct 13 17:20:34 2015 -0400
@@ -1,4 +1,4 @@
-<tool id="bedtools_annotatebed" name="AnnotateBed" version="@WRAPPER_VERSION@.0">
+<tool id="bedtools_annotatebed" name="AnnotateBed" version="@WRAPPER_VERSION@.1">
     <description>annotate coverage of features from multiple files</description>
     <macros>
         <import>macros.xml</import>
@@ -7,6 +7,7 @@
     <expand macro="stdio" />
     <command>
 <![CDATA[
+
         bedtools annotate
         -i "${inputA}"
         #if $names.names_select == 'yes':
@@ -22,6 +23,8 @@
         #else:
             #set files = '" "'.join( [ str( $file ) for $file in $names.beds ] )
             -files "${files}"
+            #set names = '" "'.join( [ str( $name.display_name ) for $name in $names.beds ] )
+            -names "${names}"
         #end if
         $strand
         $counts