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comparison flankBed.xml @ 64:f6c88d2e9ae5 draft default tip

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bedtools commit 73ebd55430874a3c1483b6dd6cce0482175482f9
author iuc
date Fri, 21 Feb 2025 21:38:34 +0000
parents 9f6bd4c9479f
children
comparison
equal deleted inserted replaced
63:7411007544bf 64:f6c88d2e9ae5
1 <tool id="bedtools_flankbed" name="bedtools FlankBed" version="@TOOL_VERSION@+galaxy1" profile="@PROFILE@"> 1 <tool id="bedtools_flankbed" name="bedtools FlankBed" version="@TOOL_VERSION@+galaxy0" profile="@PROFILE@">
2 <description>create new intervals from the flanks of existing intervals</description> 2 <description>create new intervals from the flanks of existing intervals</description>
3 <macros> 3 <macros>
4 <import>macros.xml</import> 4 <import>macros.xml</import>
5 </macros> 5 </macros>
6 <expand macro="bio_tools" /> 6 <expand macro="bio_tools" />
36 <data name="output" format_source="input" metadata_source="input" /> 36 <data name="output" format_source="input" metadata_source="input" />
37 </outputs> 37 </outputs>
38 <tests> 38 <tests>
39 <test> 39 <test>
40 <param name="input" value="a.bed" ftype="bed" /> 40 <param name="input" value="a.bed" ftype="bed" />
41 <param name="genome_file_opts_selector" value="hist" /> 41 <param name="genome_file_opts|genome_file_opts_selector" value="hist" />
42 <param name="genome" value="mm9_chr1.len" ftype="tabular"/> 42 <param name="genome_file_opts|genome" value="mm9_chr1.len" ftype="tabular"/>
43 <param name="addition_select" value="b"/> 43 <param name="addition|addition_select" value="b"/>
44 <param name="b" value="5"/> 44 <param name="addition|b" value="5"/>
45 <output name="output" file="flankBed_result1.bed" ftype="bed" /> 45 <output name="output" file="flankBed_result1.bed" ftype="bed" />
46 </test> 46 </test>
47 <test> 47 <test>
48 <param name="input" value="a.bed" ftype="bed" /> 48 <param name="input" value="a.bed" ftype="bed" />
49 <param name="genome_file_opts_selector" value="hist" /> 49 <param name="genome_file_opts|genome_file_opts_selector" value="hist" />
50 <param name="genome" value="mm9_chr1.len" ftype="tabular"/> 50 <param name="genome_file_opts|genome" value="mm9_chr1.len" ftype="tabular"/>
51 <param name="addition_select" value="lr"/> 51 <param name="addition|addition_select" value="lr"/>
52 <param name="l" value="2"/> 52 <param name="addition|l" value="2"/>
53 <param name="r" value="3"/> 53 <param name="addition|r" value="3"/>
54 <output name="output" file="flankBed_result2.bed" ftype="bed" /> 54 <output name="output" file="flankBed_result2.bed" ftype="bed" />
55 </test> 55 </test>
56 </tests> 56 </tests>
57 <help><![CDATA[ 57 <help><![CDATA[
58 **What it does** 58 **What it does**