Mercurial > repos > iuc > bedtools

comparison bedToBam.xml @ 64:f6c88d2e9ae5 draft default tip

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bedtools commit 73ebd55430874a3c1483b6dd6cce0482175482f9
author iuc
date Fri, 21 Feb 2025 21:38:34 +0000
parents 9f6bd4c9479f
children
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63:7411007544bf 64:f6c88d2e9ae5
1 <tool id="bedtools_bedtobam" name="bedtools BED to BAM" version="@TOOL_VERSION@+galaxy1" profile="@PROFILE@"> 1 <tool id="bedtools_bedtobam" name="bedtools BED to BAM" version="@TOOL_VERSION@+galaxy0" profile="@PROFILE@">
2 <description>converter</description> 2 <description>converter</description>
3 <macros> 3 <macros>
4 <import>macros.xml</import> 4 <import>macros.xml</import>
5 </macros> 5 </macros>
6 <expand macro="bio_tools" /> 6 <expand macro="bio_tools" />
27 <data name="output" format="bam" metadata_source="input" label="${input.name} (as BAM)"/> 27 <data name="output" format="bam" metadata_source="input" label="${input.name} (as BAM)"/>
28 </outputs> 28 </outputs>
29 <tests> 29 <tests>
30 <test> 30 <test>
31 <param name="input" value="bedToBam1.bed" ftype="bed" /> 31 <param name="input" value="bedToBam1.bed" ftype="bed" />
32 <param name="genome_file_opts_selector" value="hist" /> 32 <param name="genome_file_opts|genome_file_opts_selector" value="hist" />
33 <param name="genome" value="mm9_chr1.len" ftype="tabular" /> 33 <param name="genome_file_opts|genome" value="mm9_chr1.len" ftype="tabular" />
34 <output name="output" file="bedToBam_result.bam" lines_diff="4" ftype="bam" /> 34 <output name="output" file="bedToBam_result.bam" lines_diff="4" ftype="bam" />
35 </test> 35 </test>
36 </tests> 36 </tests>
37 <help><![CDATA[ 37 <help><![CDATA[
38 **What it does** 38 **What it does**