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comparison complementBed.xml @ 64:f6c88d2e9ae5 draft default tip

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bedtools commit 73ebd55430874a3c1483b6dd6cce0482175482f9
author iuc
date Fri, 21 Feb 2025 21:38:34 +0000
parents 9f6bd4c9479f
children
comparison
equal deleted inserted replaced
63:7411007544bf 64:f6c88d2e9ae5
1 <tool id="bedtools_complementbed" name="bedtools ComplementBed" version="@TOOL_VERSION@+galaxy1" profile="@PROFILE@"> 1 <tool id="bedtools_complementbed" name="bedtools ComplementBed" version="@TOOL_VERSION@+galaxy0" profile="@PROFILE@">
2 <description>Extract intervals not represented by an interval file</description> 2 <description>Extract intervals not represented by an interval file</description>
3 <macros> 3 <macros>
4 <import>macros.xml</import> 4 <import>macros.xml</import>
5 </macros> 5 </macros>
6 <expand macro="bio_tools" /> 6 <expand macro="bio_tools"/>
7 <expand macro="requirements" /> 7 <expand macro="requirements"/>
8 <expand macro="stdio" /> 8 <expand macro="stdio"/>
9 <command><![CDATA[ 9 <command><![CDATA[
10 complementBed 10 complementBed
11 -i '$input' 11 -i '$input'
12 @GENOME_FILE@ 12 @GENOME_FILE@
13 > '$output' 13 > '$output'
14 ]]></command> 14 ]]></command>
15 <inputs> 15 <inputs>
16 <param name="input" argument="-i" type="data" format="@STD_BEDTOOLS_INPUTS@" label="@STD_BEDTOOLS_INPUT_LABEL@ file"/> 16 <param name="input" argument="-i" type="data" format="@STD_BEDTOOLS_INPUTS@" label="@STD_BEDTOOLS_INPUT_LABEL@ file"/>
17 <expand macro="input_conditional_genome_file" /> 17 <expand macro="input_conditional_genome_file"/>
18 </inputs> 18 </inputs>
19 <outputs> 19 <outputs>
20 <data name="output" format_source="input" metadata_source="input" label="Complement of ${input.name}"/> 20 <data name="output" format_source="input" metadata_source="input" label="Complement of ${input.name}"/>
21 </outputs> 21 </outputs>
22 <tests> 22 <tests>
23 <test> 23 <test>
24 <param name="input" value="a.bed" ftype="bed" /> 24 <param name="input" value="a.bed" ftype="bed"/>
25 <param name="genome_file_opts_selector" value="hist" /> 25 <param name="genome_file_opts|genome_file_opts_selector" value="hist"/>
26 <param name="genome" value="mm9_chr1.len" ftype="tabular" /> 26 <param name="genome_file_opts|genome" value="mm9_chr1.len" ftype="tabular"/>
27 <output name="output" file="complementBed_result1.bed" ftype="bed" /> 27 <output name="output" file="complementBed_result1.bed" ftype="bed"/>
28 </test> 28 </test>
29 </tests> 29 </tests>
30 <help><![CDATA[ 30 <help><![CDATA[
31 **What it does** 31 **What it does**
32 32
34 34
35 .. image:: $PATH_TO_IMAGES/complement-glyph.png 35 .. image:: $PATH_TO_IMAGES/complement-glyph.png
36 36
37 @REFERENCES@ 37 @REFERENCES@
38 ]]></help> 38 ]]></help>
39 <expand macro="citations" /> 39 <expand macro="citations"/>
40 </tool> 40 </tool>