Mercurial > repos > iuc > bedtools

comparison intersectBed.xml @ 28:f0aca67fdb71 draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bedtools commit 391d2d41095edb2badf70924d3636238453ee377
author iuc
date Mon, 23 Jan 2017 06:42:52 -0500
parents 5efc48568d8d
children 1133660b0f9d
comparison
equal deleted inserted replaced
27:a39035fe5180 28:f0aca67fdb71
9 <![CDATA[ 9 <![CDATA[
10 #set inputBs = '" "'.join( [ str( $file ) for $file in $inputB ] ) 10 #set inputBs = '" "'.join( [ str( $file ) for $file in $inputB ] )
11 #set modes = ' '.join( str($overlap_mode).split(',') ) 11 #set modes = ' '.join( str($overlap_mode).split(',') )
12 12
13 bedtools intersect 13 bedtools intersect
14 #if $inputA.ext == "bam": 14 #if $inputA.is_of_type('bam'):
15 -abam "${inputA}" 15 -abam "${inputA}"
16 #else: 16 #else:
17 -a "${inputA}" 17 -a "${inputA}"
18 #end if 18 #end if
19 19