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comparison spacingBed.xml @ 50:df28283b3778 draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bedtools commit b68002321ade5e160c556517a98ffb70f068be95
author iuc
date Mon, 29 Apr 2019 05:54:22 -0400
parents 2f457890d8c8
children 7a06bb42dbb1
comparison
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49:5074e81a5ce1 50:df28283b3778
1 <tool id="bedtools_spacingbed" name="bedtools SpacingBed" version="@WRAPPER_VERSION@"> 1 <tool id="bedtools_spacingbed" name="bedtools SpacingBed" version="@TOOL_VERSION@">
2 <description>reports the distances between features</description> 2 <description>reports the distances between features</description>
3 <macros> 3 <macros>
4 <import>macros.xml</import> 4 <import>macros.xml</import>
5 </macros> 5 </macros>
6 <expand macro="requirements" /> 6 <expand macro="requirements" />
7 <expand macro="stdio" /> 7 <expand macro="stdio" />
8 <command> 8 <command><![CDATA[
9 <![CDATA[ 9 bedtools spacing
10 bedtools spacing 10 -i '$input'
11 -i '$input' 11 > '$output'
12 > '$output' 12 ]]></command>
13 ]]>
14 </command>
15 <inputs> 13 <inputs>
16 <param format="bam,@STD_BEDTOOLS_INPUTS@" name="input" type="data" label="@STD_BEDTOOLS_INPUT_LABEL@/BAM file"/> 14 <param name="input" argument="-i" type="data" format="bam,@STD_BEDTOOLS_INPUTS@" label="@STD_BEDTOOLS_INPUT_LABEL@/BAM file"/>
17 </inputs> 15 </inputs>
18 <outputs> 16 <outputs>
19 <data format_source="input" name="output" metadata_source="input" label="Spaces between intervals of ${input}"/> 17 <data name="output" format_source="input" metadata_source="input" label="Spaces between intervals of ${input}"/>
20 </outputs> 18 </outputs>
21 <tests> 19 <tests>
22 <test> 20 <test>
23 <param name="input" value="a.bed" ftype="bed" /> 21 <param name="input" value="a.bed" ftype="bed" />
24 <output name="output" file="spacingBed_result1.bed" ftype="bed" /> 22 <output name="output" file="spacingBed_result1.bed" ftype="bed" />
25 </test> 23 </test>
26 </tests> 24 </tests>
27 <help> 25 <help><![CDATA[
28 <![CDATA[
29 **What it does** 26 **What it does**
30 27
31 Report the spacing between intervals in a file. 28 Report the spacing between intervals in a file.
32 29
33
34 @REFERENCES@ 30 @REFERENCES@
35 ]]> 31 ]]></help>
36 </help>
37 <expand macro="citations" /> 32 <expand macro="citations" />
38 </tool> 33 </tool>