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comparison randomBed.xml @ 64:f6c88d2e9ae5 draft default tip

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bedtools commit 73ebd55430874a3c1483b6dd6cce0482175482f9
author iuc
date Fri, 21 Feb 2025 21:38:34 +0000
parents 9f6bd4c9479f
children
comparison
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63:7411007544bf 64:f6c88d2e9ae5
9 <command><![CDATA[ 9 <command><![CDATA[
10 bedtools random 10 bedtools random
11 @GENOME_FILE@ 11 @GENOME_FILE@
12 -l $length 12 -l $length
13 -n $intervals 13 -n $intervals
14 #if str($seed.seed_choose) == "True": 14 #if str($seed) != "":
15 -seed $seed.seed 15 -seed $seed
16 #end if 16 #end if
17 > '$output' 17 > '$output'
18 ]]></command> 18 ]]></command>
19 <inputs> 19 <inputs>
20 <expand macro="input_conditional_genome_file" /> 20 <expand macro="input_conditional_genome_file" />
25 <outputs> 25 <outputs>
26 <data name="output" format="bed" /> 26 <data name="output" format="bed" />
27 </outputs> 27 </outputs>
28 <tests> 28 <tests>
29 <test> 29 <test>
30 <param name="genome_file_opts_selector" value="hist" /> 30 <param name="genome_file_opts|genome_file_opts_selector" value="hist" />
31 <param name="genome" value="mm9_chr1.len" ftype="tabular" /> 31 <param name="genome_file_opts|genome" value="mm9_chr1.len" ftype="tabular" />
32 <param name="seed_choose" value="False" />
33 <param name="length" value="5" /> 32 <param name="length" value="5" />
34 <param name="intervals" value="3" /> 33 <param name="intervals" value="3" />
35 <output name="output"> 34 <output name="output">
36 <assert_contents> 35 <assert_contents>
37 <has_text_matching expression="chr1" /> 36 <has_text_matching expression="chr1" />