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comparison tagBed.xml @ 42:d279800f4ff9 draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bedtools commit b75b9e79cf3186a22dc2e1e9d27c1a080b891b59
author iuc
date Thu, 26 Apr 2018 17:02:24 -0400
parents a2d4c30ba2f9
children 2f457890d8c8
comparison
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41:c96688f1746d 42:d279800f4ff9
18 > "${output}" 18 > "${output}"
19 ]]> 19 ]]>
20 </command> 20 </command>
21 <inputs> 21 <inputs>
22 <param name="inputA" format="bam" type="data" label="BAM file"/> 22 <param name="inputA" format="bam" type="data" label="BAM file"/>
23 <param name="inputB" format="bed,gff,vcf" multiple="True" type="data" label="BED/VCF/GFF file" /> 23 <param name="inputB" format="@STD_BEDTOOLS_INPUTS@" multiple="True" type="data" label="@STD_BEDTOOLS_INPUT_LABEL@ file" />
24 <expand macro="strand2" /> 24 <expand macro="strand2" />
25 <expand macro="overlap" /> 25 <expand macro="overlap" />
26 <param name="tag" type="text" value="YB" label="Specify the tag to use" /> 26 <param name="tag" type="text" value="YB" label="Specify the tag to use" />
27 <param name="field" type="select" label="Field from the annotation files to populate tags?"> 27 <param name="field" type="select" label="Field from the annotation files to populate tags?">
28 <option value="-labels" selected="True">Labels</option> 28 <option value="-labels" selected="True">Labels</option>
44 </tests> 44 </tests>
45 <help> 45 <help>
46 <![CDATA[ 46 <![CDATA[
47 **What it does** 47 **What it does**
48 48
49 Annotates a BAM file based on overlaps with multiple BED/GFF/VCF files on the intervals in an input bam file 49 Annotates a BAM file based on overlaps with multiple @STD_BEDTOOLS_INPUT_LABEL@ files on the intervals in an input bam file
50 50
51 @REFERENCES@ 51 @REFERENCES@
52 ]]> 52 ]]>
53 </help> 53 </help>
54 <expand macro="citations" /> 54 <expand macro="citations" />