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comparison maskFastaBed.xml @ 42:d279800f4ff9 draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bedtools commit b75b9e79cf3186a22dc2e1e9d27c1a080b891b59
author iuc
date Thu, 26 Apr 2018 17:02:24 -0400
parents ac2040a5e6ff
children 2f457890d8c8
comparison
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41:c96688f1746d 42:d279800f4ff9
15 -fo '${output}' 15 -fo '${output}'
16 $fullheader 16 $fullheader
17 ]]> 17 ]]>
18 </command> 18 </command>
19 <inputs> 19 <inputs>
20 <param format="bed,vcf,gff,gff3" name="input" type="data" label="BED/VCF/GFF file"/> 20 <param format="@STD_BEDTOOLS_INPUTS@" name="input" type="data" label="@STD_BEDTOOLS_INPUT_LABEL@ file"/>
21 <param format="fasta" name="fasta" type="data" label="Fasta file"/> 21 <param format="fasta" name="fasta" type="data" label="Fasta file"/>
22 <param name="soft" type="boolean" checked="false" truevalue="-soft" falsevalue="" 22 <param name="soft" type="boolean" checked="false" truevalue="-soft" falsevalue=""
23 label="Soft-mask (that is, convert to lower-case bases) the FASTA sequence" 23 label="Soft-mask (that is, convert to lower-case bases) the FASTA sequence"
24 help="By default, hard-masking (that is, conversion to Ns) is performed. (-soft)" /> 24 help="By default, hard-masking (that is, conversion to Ns) is performed. (-soft)" />
25 <param name="mc" type="text" value="N" 25 <param name="mc" type="text" value="N"