Mercurial > repos > iuc > bedtools

comparison bedpeToBam.xml @ 42:d279800f4ff9 draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bedtools commit b75b9e79cf3186a22dc2e1e9d27c1a080b891b59
author iuc
date Thu, 26 Apr 2018 17:02:24 -0400
parents ac2040a5e6ff
children 2f457890d8c8
comparison
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41:c96688f1746d 42:d279800f4ff9
13 -g @GENOME_FILE@ 13 -g @GENOME_FILE@
14 > '$output' 14 > '$output'
15 ]]> 15 ]]>
16 </command> 16 </command>
17 <inputs> 17 <inputs>
18 <param name="input" format="bed,gff,vcf" type="data" label="BED/VCF/GFF file"/> 18 <param name="input" format="bed,gff,vcf" type="data" label="@STD_BEDTOOLS_INPUT_LABEL@ file"/>
19 <expand macro="input_conditional_genome_file" /> 19 <expand macro="input_conditional_genome_file" />
20 <param name="mapq" type="integer" value="255" 20 <param name="mapq" type="integer" value="255"
21 label="Set a mapping quality (SAM MAPQ field) value for all BED entries" 21 label="Set a mapping quality (SAM MAPQ field) value for all BED entries"
22 help="(-mapq)" /> 22 help="(-mapq)" />
23 </inputs> 23 </inputs>