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comparison annotateBed.xml @ 42:d279800f4ff9 draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bedtools commit b75b9e79cf3186a22dc2e1e9d27c1a080b891b59
author iuc
date Thu, 26 Apr 2018 17:02:24 -0400
parents c0fbce5dc84a
children 2f457890d8c8
comparison
equal deleted inserted replaced
41:c96688f1746d 42:d279800f4ff9
31 $both 31 $both
32 > "${output}" 32 > "${output}"
33 ]]> 33 ]]>
34 </command> 34 </command>
35 <inputs> 35 <inputs>
36 <param format="bed,vcf,gff,gff3" name="inputA" type="data" label="BED/VCF/GFF file" /> 36 <param format="@STD_BEDTOOLS_INPUTS@" name="inputA" type="data" label="@STD_BEDTOOLS_INPUT_LABEL@ file" />
37 <!-- Additional files, if the user needs more --> 37 <!-- Additional files, if the user needs more -->
38 <conditional name="names"> 38 <conditional name="names">
39 <param name="names_select" type="select" label="Specify names for each file"> 39 <param name="names_select" type="select" label="Specify names for each file">
40 <option value="no" selected="True">No</option> 40 <option value="no" selected="True">No</option>
41 <option value="yes">Yes</option> 41 <option value="yes">Yes</option>
71 </tests> 71 </tests>
72 <help> 72 <help>
73 <![CDATA[ 73 <![CDATA[
74 **What it does** 74 **What it does**
75 75
76 bedtools annotate, well, annotates one BED/VCF/GFF file with the coverage and number of overlaps observed from multiple other BED/VCF/GFF files. In this way, it allows one to ask to what degree one feature coincides with multiple other feature types with a single command. 76 bedtools annotate, well, annotates one @STD_BEDTOOLS_INPUT_LABEL@ file with the coverage and number of overlaps observed from multiple other @STD_BEDTOOLS_INPUT_LABEL@ files. In this way, it allows one to ask to what degree one feature coincides with multiple other feature types with a single command.
77 77
78 @REFERENCES@ 78 @REFERENCES@
79 ]]> 79 ]]>
80 </help> 80 </help>
81 <expand macro="citations" /> 81 <expand macro="citations" />