Mercurial > repos > iuc > bedtools

comparison maskFastaBed.xml @ 26:c0fbce5dc84a draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bedtools commit 19967671ddd4e750f53d71274e5c12325a402811
author iuc
date Mon, 17 Oct 2016 10:13:20 -0400
parents a2d4c30ba2f9
children ac2040a5e6ff
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25:6c6963cf9136 26:c0fbce5dc84a
19 <param format="bed,vcf,gff,gff3" name="input" type="data" label="BED/VCF/GFF file"/> 19 <param format="bed,vcf,gff,gff3" name="input" type="data" label="BED/VCF/GFF file"/>
20 <param format="fasta" name="fasta" type="data" label="Fasta file"/> 20 <param format="fasta" name="fasta" type="data" label="Fasta file"/>
21 <param name="soft" type="boolean" checked="false" truevalue="-soft" falsevalue="" 21 <param name="soft" type="boolean" checked="false" truevalue="-soft" falsevalue=""
22 label="Soft-mask (that is, convert to lower-case bases) the FASTA sequence" 22 label="Soft-mask (that is, convert to lower-case bases) the FASTA sequence"
23 help="By default, hard-masking (that is, conversion to Ns) is performed. (-soft)" /> 23 help="By default, hard-masking (that is, conversion to Ns) is performed. (-soft)" />
24 <param name="mc" type="text" value="N" length="1" 24 <param name="mc" type="text" value="N"
25 label="Replace masking character" 25 label="Replace masking character"
26 help="That is, instead of masking with Ns, use another character. (-mc)" /> 26 help="That is, instead of masking with Ns, use another character. (-mc)" />
27 </inputs> 27 </inputs>
28 <outputs> 28 <outputs>
29 <data format="fasta" name="output" /> 29 <data format="fasta" name="output" />