Mercurial > repos > iuc > bedtools

comparison jaccardBed.xml @ 26:c0fbce5dc84a draft

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bedtools commit 19967671ddd4e750f53d71274e5c12325a402811
author iuc
date Mon, 17 Oct 2016 10:13:20 -0400
parents a2d4c30ba2f9
children d279800f4ff9
comparison
equal deleted inserted replaced
25:6c6963cf9136 26:c0fbce5dc84a
10 bedtools jaccard 10 bedtools jaccard
11 $strand 11 $strand
12 $split 12 $split
13 $reciprocal 13 $reciprocal
14 -f $overlap 14 -f $overlap
15 -a $inputA 15 -a '$inputA'
16 -b $inputB 16 -b '$inputB'
17 > $output 17 > '$output'
18 ]]> 18 ]]>
19 </command> 19 </command>
20 <inputs> 20 <inputs>
21 <param format="bed,vcf,gff,gff3" name="inputA" type="data" label="BED/VCF/GFF file"/> 21 <param format="bed,vcf,gff,gff3" name="inputA" type="data" label="BED/VCF/GFF file"/>
22 <param format="bed,vcf,gff,gff3" name="inputB" type="data" label="BED/VCF/GFF file"/> 22 <param format="bed,vcf,gff,gff3" name="inputB" type="data" label="BED/VCF/GFF file"/>
23 <expand macro="overlap" /> 23 <expand macro="overlap" />
24 <expand macro="reciprocal" /> 24 <expand macro="reciprocal" />
25 <param name="strand" type="boolean" checked="false" truevalue="-s" falsevalue="" 25 <param name="strand" type="boolean" checked="false" truevalue="-s" falsevalue=""
26 label="Force strandedness" 26 label="Force strandedness"
27 help="That is, only report hits in B that overlap A on the same strand. By default, overlaps are reported without respect to strand. (-s)" /> 27 help="That is, only report hits in B that overlap A on the same strand. By default, overlaps are reported without respect to strand. (-s)" />
28 <expand macro="strand2" /> 28 <expand macro="strand2" />
29 <expand macro="split" /> 29 <expand macro="split" />
30 </inputs> 30 </inputs>