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comparison groupbyBed.xml @ 26:c0fbce5dc84a draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bedtools commit 19967671ddd4e750f53d71274e5c12325a402811
author iuc
date Mon, 17 Oct 2016 10:13:20 -0400
parents a2d4c30ba2f9
children d279800f4ff9
comparison
equal deleted inserted replaced
25:6c6963cf9136 26:c0fbce5dc84a
6 <expand macro="requirements" /> 6 <expand macro="requirements" />
7 <expand macro="stdio" /> 7 <expand macro="stdio" />
8 <command> 8 <command>
9 <![CDATA[ 9 <![CDATA[
10 bedtools groupby 10 bedtools groupby
11 -i "${inputA}"
12 -g '$group'
11 -c "${cols}" 13 -c "${cols}"
12 -g $group
13 -o $operation 14 -o $operation
14 -i "${inputA}"
15 > "${output}" 15 > "${output}"
16 ]]> 16 ]]>
17 </command> 17 </command>
18 <inputs> 18 <inputs>
19 <param format="bed" name="inputA" type="data" label="BED file"/> 19 <param format="bed" name="inputA" type="data" label="BED file"/>
20 <expand macro="choose_columns" /> 20 <expand macro="choose_columns" />
21 <param name="group" type="text" value="1,2,3" 21 <param name="group" type="text" value="1,2,3"
22 label="Specifies which column(s) (1-based) should be used to group the input" 22 label="Specifies which column(s) (1-based) should be used to group the input"
23 help="Columns may be comma-separated with each column must be explicitly listed. Or, ranges (e.g. 1-4) are also allowed. (-g)"> 23 help="Columns may be comma-separated with each column must be explicitly listed. Or, ranges (e.g. 1-4) are also allowed. (-g)">
24 <sanitizer invalid_char=""> 24 <sanitizer invalid_char="">
25 <valid initial="string.digits"><add value=","/><add value="-"/></valid> 25 <valid initial="string.digits"><add value=","/><add value="-"/></valid>
26 </sanitizer> 26 </sanitizer>