Mercurial > repos > iuc > bedtools

comparison genomeCoverageBed.xml @ 26:c0fbce5dc84a draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bedtools commit 19967671ddd4e750f53d71274e5c12325a402811
author iuc
date Mon, 17 Oct 2016 10:13:20 -0400
parents 2a576a9ef0cb
children b0d5e752c0c5
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25:6c6963cf9136 26:c0fbce5dc84a
1 <tool id="bedtools_genomecoveragebed" name="Genome Coverage" version="@WRAPPER_VERSION@.1"> 1 <tool id="bedtools_genomecoveragebed" name="Genome Coverage" version="@WRAPPER_VERSION@.0">
2 <description>compute the coverage over an entire genome</description> 2 <description>compute the coverage over an entire genome</description>
3 <macros> 3 <macros>
4 <import>macros.xml</import> 4 <import>macros.xml</import>
5 </macros> 5 </macros>
6 <expand macro="requirements" /> 6 <expand macro="requirements" />
156 * 3. The number of bases on chromosome (or genome) with depth equal to column 2. 156 * 3. The number of bases on chromosome (or genome) with depth equal to column 2.
157 * 4. The size of chromosome (or entire genome) in base pairs 157 * 4. The size of chromosome (or entire genome) in base pairs
158 * 5. The fraction of bases on chromosome (or entire genome) with depth equal to column 2. 158 * 5. The fraction of bases on chromosome (or entire genome) with depth equal to column 2.
159 159
160 **Example Output**: 160 **Example Output**:
161 161
162 chr2L 0 1379895 23011544 0.0599653 162 chr2L 0 1379895 23011544 0.0599653
163 chr2L 1 837250 23011544 0.0363839 163 chr2L 1 837250 23011544 0.0363839
164 chr2L 2 904442 23011544 0.0393038 164 chr2L 2 904442 23011544 0.0393038
165 chr2L 3 913723 23011544 0.0397072 165 chr2L 3 913723 23011544 0.0397072
166 chr2L 4 952166 23011544 0.0413778 166 chr2L 4 952166 23011544 0.0413778