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comparison clusterBed.xml @ 26:c0fbce5dc84a draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bedtools commit 19967671ddd4e750f53d71274e5c12325a402811
author iuc
date Mon, 17 Oct 2016 10:13:20 -0400
parents a2d4c30ba2f9
children d279800f4ff9
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25:6c6963cf9136 26:c0fbce5dc84a
8 <command> 8 <command>
9 <![CDATA[ 9 <![CDATA[
10 bedtools cluster 10 bedtools cluster
11 $strand 11 $strand
12 -d $distance 12 -d $distance
13 -i $inputA 13 -i '$inputA'
14 > $output 14 > '$output'
15 ]]> 15 ]]>
16 </command> 16 </command>
17 <inputs> 17 <inputs>
18 <param format="bed,vcf,gff,gff3" name="inputA" type="data" label="BED/VCF/GFF file"/> 18 <param format="bed,vcf,gff,gff3" name="inputA" type="data" label="BED/VCF/GFF file"/>
19 <param name="strand" type="boolean" checked="false" truevalue="-s" falsevalue="" label="Force strandedness." 19 <param name="strand" type="boolean" checked="false" truevalue="-s" falsevalue="" label="Force strandedness."
20 help="That is, only cluster features that are the same strand. By default, this is disabled." /> 20 help="That is, only cluster features that are the same strand. By default, this is disabled." />
21 <param name="distance" type="integer" value="0" 21 <param name="distance" type="integer" value="0"
22 label="Maximum distance between features allowed for features to be clustered" 22 label="Maximum distance between features allowed for features to be clustered"
23 help="Default is 0. That is, overlapping and/or book-ended features are clustered." /> 23 help="Default is 0. That is, overlapping and/or book-ended features are clustered." />
24 </inputs> 24 </inputs>
25 <outputs> 25 <outputs>
26 <data format_source="inputA" name="output" metadata_source="inputA"/> 26 <data format_source="inputA" name="output" metadata_source="inputA"/>
27 </outputs> 27 </outputs>