Mercurial > repos > iuc > bedtools
comparison spacingBed.xml @ 17:a2d4c30ba2f9 draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bedtools commit 0887009a23d176b21536c9fd8a18c4fecc417d4f
| author | iuc |
|---|---|
| date | Sun, 21 Jun 2015 22:49:46 -0400 |
| parents | |
| children | c0fbce5dc84a |
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| 16:e30113df8cf6 | 17:a2d4c30ba2f9 |
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| 1 <tool id="bedtools_spacingbed" name="SpacingBed" version="@WRAPPER_VERSION@.0"> | |
| 2 <description>reports the distances between features</description> | |
| 3 <macros> | |
| 4 <import>macros.xml</import> | |
| 5 </macros> | |
| 6 <expand macro="requirements" /> | |
| 7 <expand macro="stdio" /> | |
| 8 <command> | |
| 9 <![CDATA[ | |
| 10 bedtools spacing | |
| 11 -i $input | |
| 12 > $output | |
| 13 ]]> | |
| 14 </command> | |
| 15 <inputs> | |
| 16 <param format="bed,vcf,gff,gff3,bam" name="input" type="data" label="BED/VCF/GFF/BAM file"/> | |
| 17 </inputs> | |
| 18 <outputs> | |
| 19 <data format_source="input" name="output" metadata_source="input" label="Spaces between intervals of ${input}"/> | |
| 20 </outputs> | |
| 21 <tests> | |
| 22 <test> | |
| 23 <param name="input" value="a.bed" ftype="bed" /> | |
| 24 <output name="output" file="spacingBed_result1.bed" ftype="bed" /> | |
| 25 </test> | |
| 26 </tests> | |
| 27 <help> | |
| 28 <![CDATA[ | |
| 29 **What it does** | |
| 30 | |
| 31 Report the spacing between intervals in a file. | |
| 32 | |
| 33 | |
| 34 @REFERENCES@ | |
| 35 ]]> | |
| 36 </help> | |
| 37 <expand macro="citations" /> | |
| 38 </tool> |