Mercurial > repos > iuc > bedtools

comparison makeWindowsBed.xml @ 52:9a9f1a7abf54 draft

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"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bedtools commit fe3f54a0d3edb83fcf6752e3b1524c582b4febd5"
author iuc
date Fri, 06 Sep 2019 14:28:37 -0400
parents df28283b3778
children 7a06bb42dbb1
comparison
equal deleted inserted replaced
51:b4cf5fca8773 52:9a9f1a7abf54
17 #if $action.step_size.step_size_select == 'yes': 17 #if $action.step_size.step_size_select == 'yes':
18 -s $action.step_size.step_size 18 -s $action.step_size.step_size
19 #end if 19 #end if
20 #else: 20 #else:
21 -n $action.number 21 -n $action.number
22 -s $action.step_size
23 #end if 22 #end if
24 $sourcename 23 $sourcename
25 > '$output' 24 > '$output'
26 ]]></command> 25 ]]></command>
27 <inputs> 26 <inputs>
61 </when> 60 </when>
62 <when value="number"> 61 <when value="number">
63 <param name="number" argument="-n" type="integer" value="1" 62 <param name="number" argument="-n" type="integer" value="1"
64 label="Divide each input interval (either a chromosome or a BED interval) to fixed number of windows" 63 label="Divide each input interval (either a chromosome or a BED interval) to fixed number of windows"
65 help="I.e. same number of windows, with varying window sizes" /> 64 help="I.e. same number of windows, with varying window sizes" />
66 <param name="step_size" argument="-s" type="integer" value="100" label="Specify it" />
67 </when> 65 </when>
68 </conditional> 66 </conditional>
69 <param name="sourcename" type="select" label="ID Naming Options"> 67 <param name="sourcename" type="select" label="ID Naming Options">
70 <option value="" selected="true">Default</option> 68 <option value="" selected="true">Default</option>
71 <option value="-i src">use the source interval's name</option> 69 <option value="-i src">use the source interval's name</option>
99 <param name="type_select" value="genome" /> 97 <param name="type_select" value="genome" />
100 <param name="genome_file_opts_selector" value="hist" /> 98 <param name="genome_file_opts_selector" value="hist" />
101 <param name="genome" value="mm9_chr1.len" ftype="tabular" /> 99 <param name="genome" value="mm9_chr1.len" ftype="tabular" />
102 <param name="action_select" value="number" /> 100 <param name="action_select" value="number" />
103 <param name="number" value="100" /> 101 <param name="number" value="100" />
104 <param name="step_size" value="10000" />
105 <output name="output" file="makeWindowBed_result3.bed" ftype="bed" /> 102 <output name="output" file="makeWindowBed_result3.bed" ftype="bed" />
106 </test> 103 </test>
107 <test> 104 <test>
108 <param name="type_select" value="bed" /> 105 <param name="type_select" value="bed" />
109 <param name="input" value="makeWindowBed1.bed" ftype="bed" /> 106 <param name="input" value="makeWindowBed1.bed" ftype="bed" />
110 <param name="action_select" value="number" /> 107 <param name="action_select" value="number" />
111 <param name="number" value="15" /> 108 <param name="number" value="15" />
112 <param name="step_size" value="100" />
113 <output name="output" file="makeWindowBed_result4.bed" ftype="bed" /> 109 <output name="output" file="makeWindowBed_result4.bed" ftype="bed" />
114 </test> 110 </test>
115 </tests> 111 </tests>
116 <help><![CDATA[ 112 <help><![CDATA[
117 **What it does** 113 **What it does**