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comparison intersectBed.xml @ 44:9224d51be786 draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bedtools commit 393e1fef41cfb7e28005a98fd5043a3f42347686
author iuc
date Sun, 24 Jun 2018 11:52:19 -0400
parents d279800f4ff9
children 2f457890d8c8
comparison
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43:71d71721695e 44:9224d51be786
1 <tool id="bedtools_intersectbed" name="Intersect intervals" version="@WRAPPER_VERSION@.1"> 1 <tool id="bedtools_intersectbed" name="Intersect intervals" version="@WRAPPER_VERSION@.2">
2 <description>find overlapping intervals in various ways</description> 2 <description>find overlapping intervals in various ways</description>
3 <macros> 3 <macros>
4 <import>macros.xml</import> 4 <import>macros.xml</import>
5 </macros> 5 </macros>
6 <expand macro="requirements" /> 6 <expand macro="requirements" />
7 <expand macro="stdio" /> 7 <expand macro="stdio" />
8 <command> 8 <command>
9 <![CDATA[ 9 <![CDATA[
10 #set modes = ' '.join( str($overlap_mode).split(',') ) 10 #set modes = ' '.join( str($overlap_mode).split(',') )
11
12 #if $modes == "None":
13 #set modes = ''
14 #end if
11 15
12 bedtools intersect 16 bedtools intersect
13 #if $inputA.is_of_type('bam'): 17 #if $inputA.is_of_type('bam'):
14 -abam '${inputA}' 18 -abam '${inputA}'
15 #else: 19 #else: