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comparison multiCov.xml @ 1:7511823bdea1 draft

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author iuc
date Fri, 08 Aug 2014 18:17:59 -0400
parents 4fb5ea02b441
children 315929597efb
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0:4fb5ea02b441 1:7511823bdea1
52 bedtools multicov depends upon index BAM files in order to count the number of overlaps in each BAM file. As such, each BAM file should be position sorted (samtool sort aln.bam aln.sort) and indexed (samtools index aln.sort.bam) with either samtools or bamtools. 52 bedtools multicov depends upon index BAM files in order to count the number of overlaps in each BAM file. As such, each BAM file should be position sorted (samtool sort aln.bam aln.sort) and indexed (samtools index aln.sort.bam) with either samtools or bamtools.
53 53
54 @REFERENCES@ 54 @REFERENCES@
55 55
56 </help> 56 </help>
57 <expand macro="citations" />
57 </tool> 58 </tool>