Mercurial > repos > iuc > bedtools

comparison expandBed.xml @ 10:71af3ebbbb7a draft

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
Uploaded
author iuc
date Wed, 29 Apr 2015 12:06:53 -0400
parents 0d3aa592ce27
children a2d4c30ba2f9
comparison
equal deleted inserted replaced
9:21f1d1c5467b 10:71af3ebbbb7a
1 <tool id="bedtools_expandbed" name="ExpandBed" version="@WRAPPER_VERSION@.0">
2 <description></description>
3 <macros>
4 <import>macros.xml</import>
5 </macros>
6 <expand macro="requirements" />
7 <expand macro="stdio" />
8 <command>
9 <![CDATA[
10 bedtools expand
11 -c "${cols}"
12 -i "${input}"
13 > "${output}"
14 ]]>
15 </command>
16 <inputs>
17 <param format="bed,vcf,gff,gff3" name="input" type="data" label="BED/VCF/GFF file"/>
18 <expand macro="choose_columns" />
19 </inputs>
20 <outputs>
21 <data name="output" metadata_source="input" format_source="input" />
22 </outputs>
23 <tests>
24 <test>
25 <param name="input" value="expandBed1.bed" ftype="bed" />
26 <param name="cols" value="5"/>
27 <output name="output" file="expandBed_result1.bed" ftype="bed" />
28 </test>
29 <test>
30 <param name="input" value="expandBed1.bed" ftype="bed" />
31 <param name="cols" value="4,5"/>
32 <output name="output" file="expandBed_result2.bed" ftype="bed" />
33 </test>
34 </tests>
35 <help>
36 <![CDATA[
37 **What it does**
38
39 Replicate lines in a file based on columns of comma-separated values.
40
41 @REFERENCES@
42 ]]>
43 </help>
44 <expand macro="citations" />
45 </tool>