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comparison randomBed.xml @ 0:4fb5ea02b441 draft

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author iuc
date Tue, 15 Jul 2014 14:42:23 -0400
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1 <tool id="bedtools_randombed" name="RandomBed" version="@WRAPPER_VERSION@.0">
2 <description></description>
3 <macros>
4 <import>macros.xml</import>
5 </macros>
6 <expand macro="requirements" />
7 <expand macro="stdio" />
8 <command>
9 bedtools random
10 -g $genome
11 -l $length
12 -n $intervals
13 #if $seed.choose:
14 -seed $seed.seed
15 #end if
16 </command>
17 <inputs>
18 <expand macro="genome" />
19 <param name="length" type="integer" value="100" label="The length of the intervals to generate." />
20 <param name="intervals" type="integer" value="1000000" label="The number of intervals to generate." />
21 <expand macro="seed" />
22 </inputs>
23 <outputs>
24 <data format="bed" name="output" />
25 </outputs>
26 <help>
27
28 **What it does**
29
30 bedtools random will generate a random set of intervals in BED6 format. One can specify both the number (-n) and the size (-l) of the intervals that should be generated.
31
32 @REFERENCES@
33 </help>
34 </tool>