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comparison complementBed.xml @ 0:4fb5ea02b441 draft

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author iuc
date Tue, 15 Jul 2014 14:42:23 -0400
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1 <tool id="bedtools_complementbed" name="ComplementBed" version="@WRAPPER_VERSION@.0">
2 <description></description>
3 <macros>
4 <import>macros.xml</import>
5 </macros>
6 <expand macro="requirements" />
7 <expand macro="stdio" />
8 <command>
9 complementBed
10 -d $distance
11 -g genome
12 &gt; $output
13 </command>
14 <inputs>
15 <param format="bed,vcf,gff,gff3" name="inputA" type="data" label="BED/VCF/GFF file"/>
16 <expand macro="genome" />
17 </inputs>
18 <outputs>
19 <data format_source="inputA" name="output" metadata_source="inputA" label="Complemen of ${inputA.name}"/>
20 </outputs>
21 <help>
22
23 **What it does**
24
25 bedtools complement returns all intervals in a genome that are not covered by at least one interval in the input BED/GFF/VCF file.
26
27 .. image:: $PATH_TO_IMAGES/complement-glyph.png
28
29 @REFERENCES@
30 </help>
31 </tool>