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comparison Bed12ToBed6.xml @ 0:4fb5ea02b441 draft

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author iuc
date Tue, 15 Jul 2014 14:42:23 -0400
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1 <tool id="bedtools_bed12tobed6" name="Convert from BED12 to BED6" version="@WRAPPER_VERSION@.0">
2 <description></description>
3 <macros>
4 <import>macros.xml</import>
5 </macros>
6 <expand macro="requirements" />
7 <expand macro="stdio" />
8 <command>
9 bed12ToBed16
10 -i '$input'
11 &gt; '$output'
12 </command>
13 <inputs>
14 <param format="bed" name="input" type="data" label="Convert the following BED12 file to BED6"/>
15 </inputs>
16 <outputs>
17 <data format="bed" name="output" metadata_source="input" label="${input.name} (as BED6)"/>
18 </outputs>
19 <help>
20
21 **What it does**
22
23 bed12ToBed6 is a convenience tool that converts BED features in BED12 (a.k.a. “blocked” BED features such as genes) to discrete BED6 features. For example, in the case of a gene with six exons, bed12ToBed6 would create six separate BED6 features (i.e., one for each exon).
24
25 @REFERENCES@
26 </help>
27 </tool>