Mercurial > repos > iuc > bedtools

comparison tool_dependencies.xml @ 4:315929597efb draft

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author iuc
date Wed, 07 Jan 2015 12:45:05 -0500
parents 190a747ddaa8
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3:190a747ddaa8 4:315929597efb
1 <?xml version="1.0"?> 1 <?xml version="1.0"?>
2 <tool_dependency> 2 <tool_dependency>
3 <package name="bedtools" version="2.22"> 3 <package name="bedtools" version="2.22">
4 <install version="1.0"> 4 <repository changeset_revision="8359d121547e" name="package_bedtools_2_22" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu" />
5 <actions>
6 <action type="download_by_url">https://github.com/arq5x/bedtools2/releases/download/v2.22.1/bedtools-2.22.1.tar.gz</action>
7 <action type="shell_command">make</action>
8 <action type="move_directory_files">
9 <source_directory>bin</source_directory>
10 <destination_directory>$INSTALL_DIR/bin</destination_directory>
11 </action>
12 <action type="set_environment">
13 <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR/bin</environment_variable>
14 </action>
15 </actions>
16 </install>
17 <readme>BEDTools is a collection of utilities for comparing, summarizing, and intersecting genomic features in BED, GTF/GFF, VCF and BAM formats.</readme>
18 </package> 5 </package>
19 </tool_dependency> 6 </tool_dependency>
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